Os03g0306800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CP12 (Fragment).
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Os03g0306800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CP12 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.39 | 0.34 | 14.5 | 0.126 | 1.27 | 0.828 | -0.329 | -1.42 | -0.213 | 12.1 | 24.58 | 10 | -- | -- |
| 52.89 | 0.341 | 14.5 | 0.309 | 1.28 | 0.72 | -0.522 | -- | -0.161 | 12.2 | 24.58 | 10 | -- | -- |
| 52.43 | 0.34 | 14.5 | 0.0678 | 1.26 | 0.874 | -- | -1.82 | -0.228 | 12.1 | 24.58 | 10 | -- | -- |
| 54.04 | 0.345 | 14.5 | 0.289 | 1.28 | 0.71 | -- | -- | -0.163 | 12.1 | 24.58 | 10 | -- | -- |
| 127.73 | 0.529 | 14.6 | -0.304 | -- | 1.97 | -- | -3.5 | -0.39 | -- | 24.58 | 10 | -- | -- |
| 60.85 | 0.366 | 14.5 | 0.416 | 1.51 | -- | -0.445 | -- | -0.0894 | 12.6 | -- | -- | -- | -- |
| 61.69 | 0.368 | 14.5 | 0.399 | 1.51 | -- | -- | -- | -0.0919 | 12.6 | -- | -- | -- | -- |
| 133.34 | 0.54 | 14.5 | 0.0991 | -- | 1.71 | -- | -- | -0.306 | -- | 24 | 8 | -- | -- |
| 56.16 | 0.351 | 14.5 | -- | 1.26 | 0.785 | -- | -- | -0.201 | 12.1 | 24.58 | 10 | -- | -- |
| 204.07 | 0.668 | 14.5 | 0.346 | -- | -- | -- | -- | -0.118 | -- | -- | -- | -- | -- |
| 65.88 | 0.38 | 14.5 | -- | 1.5 | -- | -- | -- | -0.136 | 12.6 | -- | -- | -- | -- |
| 133.59 | 0.54 | 14.5 | -- | -- | 1.73 | -- | -- | -0.318 | -- | 24 | 8 | -- | -- |
| 207.22 | 0.672 | 14.5 | -- | -- | -- | -- | -- | -0.156 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.74 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 11 |
| 2 | 48.98 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 10 |
| 3 | 48.99 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 19 |
| 5 | 49.01 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 16 | 49.46 | temperature | 10 | 10 | > th | dose dependent | sin | 0 | NA |
| 22 | 49.62 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 12 |
| 97 | 50.70 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 19 |
| 99 | 50.70 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 21 |
| 105 | 50.78 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 17 |
| 110 | 50.82 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 19 |
| 125 | 50.92 | temperature | 30 | 30 | < th | dose dependent | rect. | 24 | 23 |
| 130 | 50.95 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 15 |
| 208 | 51.33 | temperature | 30 | 10 | < th | dose dependent | sin | 23 | NA |
| 253 | 51.59 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 13 |
| 276 | 51.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 12 |
| 297 | 51.78 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 18 |
| 308 | 51.81 | temperature | 25 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 338 | 51.92 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 12 |
| 348 | 51.97 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 10 |
| 401 | 52.14 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 15 | 6 |
| 420 | 52.20 | wind | 9 | 720 | < th | dose independent | rect. | 6 | 18 |
| 499 | 52.39 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 512 | 52.44 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 515 | 52.44 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 523 | 52.46 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 581 | 52.56 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 632 | 52.70 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 15 | 6 |
| 645 | 52.72 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 15 | 8 |
| 655 | 52.74 | wind | 9 | 720 | < th | dose independent | rect. | 12 | 6 |
| 661 | 52.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 685 | 52.81 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 15 | 4 |
| 706 | 52.85 | wind | 5 | 270 | < th | dose independent | rect. | 20 | 18 |
| 707 | 52.85 | wind | 9 | 270 | < th | dose dependent | rect. | 12 | 12 |
| 761 | 52.94 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 772 | 52.96 | temperature | 10 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 773 | 52.96 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 23 |
| 792 | 53.01 | wind | 9 | 720 | < th | dose independent | rect. | 3 | 15 |
| 802 | 53.02 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 2 | 21 |
| 819 | 53.05 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 5 |
| 837 | 53.08 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 15 | 8 |
| 842 | 53.09 | temperature | 30 | 90 | < th | dose independent | rect. | 24 | 23 |
| 863 | 53.11 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 2 | 19 |
| 864 | 53.11 | temperature | 10 | 90 | > th | dose dependent | rect. | 6 | 20 |
| 865 | 53.12 | wind | 7 | 270 | < th | dose independent | rect. | 11 | 13 |
| 887 | 53.15 | temperature | 30 | 270 | < th | dose independent | rect. | 13 | 7 |
| 892 | 53.15 | temperature | 25 | 270 | > th | dose dependent | sin | 6 | NA |
| 897 | 53.15 | radiation | 30 | 10 | < th | dose dependent | rect. | 11 | 12 |
| 901 | 53.15 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 18 |
| 913 | 53.17 | wind | 5 | 270 | < th | dose independent | rect. | 20 | 15 |
| 946 | 53.23 | wind | 5 | 720 | < th | dose independent | rect. | 21 | 3 |
| 956 | 53.24 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 24 | 23 |
| 966 | 53.26 | wind | 9 | 270 | < th | dose dependent | rect. | 6 | 18 |
| 992 | 53.30 | temperature | 30 | 10 | < th | dose independent | rect. | 2 | 21 |