BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0306800 Os03g0306800|AK103722
         (131 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G62410.1  | chr3:23091006-23091401 FORWARD LENGTH=132          112   4e-26
AT2G47400.1  | chr2:19446889-19447263 FORWARD LENGTH=125          112   8e-26
AT1G76560.1  | chr1:28728285-28728689 FORWARD LENGTH=135           75   1e-14

>AT3G62410.1 | chr3:23091006-23091401 FORWARD LENGTH=132
          Length = 131

 Score =  112 bits (281), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 54/72 (75%), Positives = 63/72 (87%), Gaps = 2/72 (2%)

Query: 62  LAQKVSESIKQAEETCAGDPEGGECAAAWDEVEELSAAASHARDRKK--DSDPLEEYCKD 119
           ++  V +SIK+A+ETCAGDP  GEC AAWDEVEELSAAASHARD+KK   SDPLEEYCKD
Sbjct: 60  ISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKKKADGSDPLEEYCKD 119

Query: 120 NPETDECRTYED 131
           NPET+ECRTY++
Sbjct: 120 NPETNECRTYDN 131



>AT2G47400.1 | chr2:19446889-19447263 FORWARD LENGTH=125
          Length = 124

 Score =  112 bits (279), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 54/73 (73%), Positives = 64/73 (87%), Gaps = 2/73 (2%)

Query: 61  ELAQKVSESIKQAEETCAGDPEGGECAAAWDEVEELSAAASHARDRKK--DSDPLEEYCK 118
           E+++KV +SI++A+ETCA DP  GEC AAWDEVEELSAAASHARD+KK   SDPLEEYC 
Sbjct: 52  EISEKVEKSIQEAKETCADDPVSGECVAAWDEVEELSAAASHARDKKKAGGSDPLEEYCN 111

Query: 119 DNPETDECRTYED 131
           DNPETDECRTY++
Sbjct: 112 DNPETDECRTYDN 124



>AT1G76560.1 | chr1:28728285-28728689 FORWARD LENGTH=135
          Length = 134

 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 2/72 (2%)

Query: 62  LAQKVSESIKQAEETCAGDPEGGECAAAWDEVEELSAAASHARDRKK--DSDPLEEYCKD 119
           L++ + E +K+A E C  +    EC  AWDEVEE+S A +  R + K  + DPLE +C++
Sbjct: 63  LSEMIEEKVKEATEVCEAEEMSEECRVAWDEVEEVSQARADLRIKLKLLNQDPLESFCQE 122

Query: 120 NPETDECRTYED 131
           NPETDECR YED
Sbjct: 123 NPETDECRIYED 134



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.309    0.123    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,226,378
Number of extensions: 74898
Number of successful extensions: 225
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 3
Length of query: 131
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 44
Effective length of database: 8,721,377
Effective search space: 383740588
Effective search space used: 383740588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 106 (45.4 bits)