BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0301400 Os03g0301400|AK101988
(313 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0301400 Exonuclease domain containing protein 648 0.0
Os04g0623400 Exonuclease domain containing protein 208 5e-54
>Os03g0301400 Exonuclease domain containing protein
Length = 313
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/313 (100%), Positives = 313/313 (100%)
Query: 1 MSLYYIFCGNFHQLRNSIGSCSSTGLLKCGLIYRTVLQNRGNKTRPISTTILARSTRKES 60
MSLYYIFCGNFHQLRNSIGSCSSTGLLKCGLIYRTVLQNRGNKTRPISTTILARSTRKES
Sbjct: 1 MSLYYIFCGNFHQLRNSIGSCSSTGLLKCGLIYRTVLQNRGNKTRPISTTILARSTRKES 60
Query: 61 KQSFKTSRHLHSESVESSIEVLKQSDLEHLKSLQCYNIPQKVSGVKTDWPATILVFDIET 120
KQSFKTSRHLHSESVESSIEVLKQSDLEHLKSLQCYNIPQKVSGVKTDWPATILVFDIET
Sbjct: 61 KQSFKTSRHLHSESVESSIEVLKQSDLEHLKSLQCYNIPQKVSGVKTDWPATILVFDIET 120
Query: 121 TGFSRRYERIIEFAVRDLMGGKNSTIQTLINPEREIKNAYVHGISSSMVCKPDIPRFREF 180
TGFSRRYERIIEFAVRDLMGGKNSTIQTLINPEREIKNAYVHGISSSMVCKPDIPRFREF
Sbjct: 121 TGFSRRYERIIEFAVRDLMGGKNSTIQTLINPEREIKNAYVHGISSSMVCKPDIPRFREF 180
Query: 181 IPLLLQYVLSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIEMPGDWLFVDTLPIARQL 240
IPLLLQYVLSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIEMPGDWLFVDTLPIARQL
Sbjct: 181 IPLLLQYVLSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIEMPGDWLFVDTLPIARQL 240
Query: 241 IGSDGEKLKSVSLDNLREHYKIPLAGSAHRAMQDVITLCYVLQKLTFELKLTVPQLLERS 300
IGSDGEKLKSVSLDNLREHYKIPLAGSAHRAMQDVITLCYVLQKLTFELKLTVPQLLERS
Sbjct: 241 IGSDGEKLKSVSLDNLREHYKIPLAGSAHRAMQDVITLCYVLQKLTFELKLTVPQLLERS 300
Query: 301 FRVSDLSIPRPGK 313
FRVSDLSIPRPGK
Sbjct: 301 FRVSDLSIPRPGK 313
>Os04g0623400 Exonuclease domain containing protein
Length = 282
Score = 208 bits (529), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 102/202 (50%), Positives = 138/202 (68%), Gaps = 3/202 (1%)
Query: 104 GVKTDWPATILVFDIETTGFSRRYERIIEFAVRDLMGGKNSTIQTLINPEREIKNAYVH- 162
G + ATILVFD+ETTG+ + RI+EFA+ DL GGKNST +TL+NPER + + H
Sbjct: 53 GKEVAAAATILVFDLETTGYFHKDHRIVEFALCDLSGGKNSTFETLVNPERTVPDYVEHL 112
Query: 163 -GISSSMVCKPDIPRFREFIPLLLQYVLSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSK 221
I + +VC+P IPRF + IPLLL +V SRQ KPVLWVAHN + FD FL EF R
Sbjct: 113 IKIGTDLVCRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDRCS 172
Query: 222 IEMPGDWLFVDTLPIARQLIGSDGEKLKSVSLDNLREHYKIPLAGSAHRAMQDVITLCYV 281
+P DWLF DTL +A++++ ++G+K + SL+ LREHY I AHRAM+DV+ L V
Sbjct: 173 APLPADWLFFDTLLLAKKMVKAEGKK-RRTSLEALREHYGIVSHDDAHRAMRDVMILSQV 231
Query: 282 LQKLTFELKLTVPQLLERSFRV 303
QK+TF+LKLT +L+ + ++
Sbjct: 232 FQKMTFDLKLTNEELINEAMKL 253
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,873,146
Number of extensions: 373672
Number of successful extensions: 901
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 899
Number of HSP's successfully gapped: 2
Length of query: 313
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 212
Effective length of database: 11,762,187
Effective search space: 2493583644
Effective search space used: 2493583644
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)