Os04g0623400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Exonuclease domain containing protein.
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Os04g0623400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Exonuclease domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 129.04 | 0.534 | 3.45 | -0.445 | 0.294 | 1.43 | -0.0389 | -5.96 | 0.0144 | 16.4 | 29.95 | 8 | -- | -- |
| 129.59 | 0.53 | 3.43 | -0.249 | 0.287 | 0.726 | -0.0713 | -- | 0.0114 | 16.4 | 29.47 | 8 | -- | -- |
| 129.02 | 0.529 | 3.45 | -0.452 | 0.293 | 1.37 | -- | -5.7 | 0.0119 | 16.3 | 29.77 | 7 | -- | -- |
| 129.59 | 0.53 | 3.43 | -0.248 | 0.288 | 0.725 | -- | -- | 0.0114 | 16.4 | 29.5 | 7 | -- | -- |
| 132.83 | 0.537 | 3.45 | -0.482 | -- | 1.5 | -- | -5.24 | 0.00108 | -- | 29.47 | 9 | -- | -- |
| 134.19 | 0.543 | 3.44 | -0.206 | 0.383 | -- | 0.122 | -- | -0.0119 | 16.1 | -- | -- | -- | -- |
| 134.24 | 0.543 | 3.44 | -0.204 | 0.384 | -- | -- | -- | -0.0113 | 16.1 | -- | -- | -- | -- |
| 133.39 | 0.538 | 3.43 | -0.279 | -- | 0.891 | -- | -- | 0.00222 | -- | 29.04 | 8 | -- | -- |
| 131.2 | 0.533 | 3.43 | -- | 0.299 | 0.679 | -- | -- | 0.0372 | 16.3 | 29.5 | 7 | -- | -- |
| 142.24 | 0.557 | 3.44 | -0.22 | -- | -- | -- | -- | -0.0215 | -- | -- | -- | -- | -- |
| 135.34 | 0.544 | 3.43 | -- | 0.388 | -- | -- | -- | 0.0115 | 16.1 | -- | -- | -- | -- |
| 135.4 | 0.542 | 3.42 | -- | -- | 0.857 | -- | -- | 0.0327 | -- | 29.1 | 7 | -- | -- |
| 143.51 | 0.559 | 3.43 | -- | -- | -- | -- | -- | 0.0029 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 123.81 | wind | 5 | 10 | > th | dose independent | rect. | 10 | 1 |
| 5 | 123.81 | wind | 5 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 9 | 124.05 | wind | 7 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 10 | 124.21 | wind | 7 | 90 | > th | dose independent | rect. | 8 | 1 |
| 11 | 124.48 | wind | 7 | 90 | > th | dose dependent | rect. | 4 | 5 |
| 28 | 124.52 | wind | 9 | 90 | > th | dose dependent | rect. | 19 | 15 |
| 31 | 124.58 | humidity | 90 | 90 | > th | dose independent | rect. | 8 | 1 |
| 43 | 125.06 | humidity | 90 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 64 | 126.17 | wind | 3 | 1440 | > th | dose independent | rect. | 19 | 2 |
| 65 | 126.26 | wind | 3 | 1440 | < th | dose independent | rect. | 19 | 3 |
| 72 | 126.60 | wind | 3 | 1440 | < th | dose dependent | rect. | 19 | 3 |
| 139 | 128.00 | humidity | 80 | 90 | < th | dose dependent | rect. | 7 | 1 |
| 147 | 128.14 | radiation | 20 | 90 | > th | dose independent | rect. | 6 | 1 |
| 161 | 128.14 | radiation | 20 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 211 | 128.44 | wind | 1 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 217 | 128.49 | wind | 9 | 90 | > th | dose independent | rect. | 19 | 15 |
| 220 | 128.51 | humidity | 50 | 30 | < th | dose independent | rect. | 17 | 21 |
| 234 | 128.59 | humidity | 50 | 30 | < th | dose dependent | rect. | 17 | 21 |
| 243 | 128.67 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 280 | 128.97 | temperature | 30 | 10 | > th | dose dependent | rect. | 14 | 23 |
| 283 | 128.99 | temperature | 30 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 314 | 129.09 | temperature | 30 | 270 | > th | dose dependent | rect. | 13 | 1 |
| 324 | 129.13 | temperature | 30 | 10 | > th | dose dependent | no | NA | NA |
| 431 | 129.14 | temperature | 30 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 459 | 129.20 | temperature | 30 | 10 | > th | dose dependent | sin | 20 | NA |
| 490 | 129.27 | humidity | 50 | 30 | < th | dose independent | sin | 8 | NA |
| 533 | 129.37 | radiation | 20 | 30 | > th | dose independent | rect. | 9 | 1 |
| 534 | 129.37 | temperature | 30 | 30 | < th | dose independent | rect. | 3 | 23 |
| 652 | 129.43 | temperature | 30 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 671 | 129.49 | humidity | 60 | 270 | < th | dose dependent | rect. | 13 | 1 |
| 761 | 129.58 | temperature | 30 | 10 | > th | dose dependent | sin | 12 | NA |
| 765 | 129.58 | temperature | 30 | 10 | > th | dose dependent | rect. | 14 | 4 |
| 775 | 129.61 | humidity | 60 | 10 | < th | dose dependent | rect. | 14 | 21 |
| 812 | 129.71 | temperature | 30 | 10 | > th | dose independent | rect. | 9 | 9 |
| 890 | 129.76 | temperature | 30 | 30 | > th | dose independent | rect. | 12 | 6 |
| 891 | 129.76 | temperature | 30 | 30 | < th | dose independent | rect. | 8 | 23 |
| 918 | 129.81 | temperature | 30 | 90 | > th | dose dependent | rect. | 15 | 2 |
| 921 | 129.82 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 14 |
| 924 | 129.83 | temperature | 30 | 270 | > th | dose independent | rect. | 13 | 1 |
| 925 | 129.83 | temperature | 30 | 30 | < th | dose independent | rect. | 9 | 21 |
| 926 | 129.83 | humidity | 50 | 30 | < th | dose dependent | sin | 8 | NA |
| 947 | 129.88 | temperature | 30 | 30 | < th | dose independent | rect. | 21 | 23 |
| 969 | 129.89 | temperature | 25 | 30 | > th | dose independent | rect. | 9 | 1 |
| 989 | 129.91 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 1 |