BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0623400 Os04g0623400|AK110887
         (282 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G26940.1  | chr5:9481429-9482647 FORWARD LENGTH=317            190   7e-49

>AT5G26940.1 | chr5:9481429-9482647 FORWARD LENGTH=317
          Length = 316

 Score =  190 bits (482), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 94/196 (47%), Positives = 133/196 (67%), Gaps = 3/196 (1%)

Query: 54  KEVAAAATILVFDLETTGYFHKDHRIVEFALCDLSGGKNSTFETLVNPERTVPDYVEHLI 113
           K+++   T++V DLETTG   K+ RI+E A  D++GG  STF+TLVNP   VP    H+ 
Sbjct: 103 KDLSKLLTVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPG-VVPITNAHIH 161

Query: 114 KIGTDLVCRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDRCSA 173
            I  D+VCRP +PR  ++IP+ L +V SRQ PG  V+ VAHN K FD +FL  EF+RCS 
Sbjct: 162 GIRNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSY 221

Query: 174 PLPADWLFFDTLLLAKKMVKA--EGKKRRTSLEALREHYGIVSHDDAHRAMRDVMILSQV 231
            +P +WL  D+L LA++ +K+     K  +SLEAL ++Y +    DAHRA+ DV++LS+V
Sbjct: 222 EIPHNWLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKV 281

Query: 232 FQKMTFDLKLTNEELI 247
           FQK+T DLKL+  +L+
Sbjct: 282 FQKLTIDLKLSLSDLV 297



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,129,284
Number of extensions: 240890
Number of successful extensions: 658
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 656
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 185
Effective length of database: 8,447,217
Effective search space: 1562735145
Effective search space used: 1562735145
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 111 (47.4 bits)