Os03g0301400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Exonuclease domain containing protein.
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Os03g0301400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Exonuclease domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.52 | 0.369 | 11.1 | -0.283 | 1.08 | -0.472 | -0.0163 | 1.66 | -0.121 | 5.63 | 20.7 | 3380 | -- | -- |
| 61.08 | 0.364 | 11.1 | 0.00175 | 1.09 | -1.21 | 0.125 | -- | -0.0767 | 5.62 | 17.6 | 22061 | -- | -- |
| 61.52 | 0.365 | 11.1 | -0.283 | 1.08 | -0.473 | -- | 1.66 | -0.121 | 5.63 | 20.7 | 3391 | -- | -- |
| 61.05 | 0.364 | 11.1 | 0.00175 | 1.09 | -1.21 | -- | -- | -0.0767 | 5.62 | 17.6 | 22061 | -- | -- |
| 122.08 | 0.515 | 11.1 | -0.287 | -- | -0.48 | -- | 1.51 | -0.104 | -- | 20.8 | 3422 | -- | -- |
| 76.45 | 0.41 | 11.2 | -1.02 | 1.08 | -- | 0.0256 | -- | -0.403 | 5.7 | -- | -- | -- | -- |
| 76.45 | 0.409 | 11.2 | -1.02 | 1.08 | -- | -- | -- | -0.404 | 5.7 | -- | -- | -- | -- |
| 121.21 | 0.513 | 11.2 | -0.0334 | -- | -1.16 | -- | -- | -0.0768 | -- | 17.5 | 22082 | -- | -- |
| 61.04 | 0.364 | 11.1 | -- | 1.08 | -1.21 | -- | -- | -0.0799 | 5.64 | 17.6 | 22061 | -- | -- |
| 136.49 | 0.546 | 11.2 | -0.987 | -- | -- | -- | -- | -0.378 | -- | -- | -- | -- | -- |
| 103.93 | 0.477 | 11.2 | -- | 1.06 | -- | -- | -- | -0.29 | 5.74 | -- | -- | -- | -- |
| 121.21 | 0.513 | 11.2 | -- | -- | -1.19 | -- | -- | -0.0728 | -- | 17.48 | 22093 | -- | -- |
| 162.19 | 0.594 | 11.2 | -- | -- | -- | -- | -- | -0.268 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.29 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 2 | 59.39 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 3 | 59.45 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 5 | 59.72 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 21 | 15 |
| 11 | 60.24 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 15 | 60.40 | wind | 3.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 19 | 60.60 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 20 | 60.64 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 22 | 60.70 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 23 | 60.71 | wind | 3.0 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 26 | 60.79 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 27 | 60.79 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 15 |
| 30 | 60.80 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 35 | 60.82 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 17 |
| 39 | 60.84 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 22 | 10 |
| 40 | 60.84 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 21 | 17 |
| 43 | 60.85 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 22 | 15 |
| 55 | 60.90 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 66 | 60.94 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 83 | 61.00 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 85 | 61.00 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 9 | 2 |
| 89 | 61.01 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 9 | NA |
| 93 | 61.01 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 24 | 18 |
| 109 | 61.04 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 1 | 10 |
| 123 | 61.06 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 125 | 61.06 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 1 | 10 |
| 126 | 61.06 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 130 | 61.07 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 2 |
| 152 | 61.11 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 22 | 2 |
| 171 | 61.14 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 2 | 8 |
| 178 | 61.15 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 2 | 8 |
| 182 | 61.15 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 197 | 61.17 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 1 | 8 |
| 224 | 61.21 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 233 | 61.22 | radiation | 30.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 277 | 61.27 | temperature | 15.0 | 43200 | < th | dose dependent | sin | 8 | NA |
| 283 | 61.27 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 21 | 13 |
| 292 | 61.28 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 17 | 10 |
| 295 | 61.28 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 4 | NA |
| 303 | 61.29 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 329 | 61.31 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 7 | NA |
| 424 | 61.40 | temperature | 20.0 | 14400 | < th | dose independent | sin | 13 | NA |
| 430 | 61.40 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 456 | 61.42 | temperature | 20.0 | 14400 | > th | dose independent | sin | 13 | NA |
| 475 | 61.43 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 16 | 17 |
| 489 | 61.44 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 16 | 17 |
| 521 | 61.46 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 533 | 61.47 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 6 |
| 565 | 61.49 | temperature | 10.0 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 585 | 61.50 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 6 |
| 593 | 61.50 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 6 |
| 698 | 61.57 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 704 | 61.57 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 6 |
| 725 | 61.57 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 6 |
| 733 | 61.58 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 737 | 61.58 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 14 |
| 745 | 61.58 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 4 |
| 757 | 61.59 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 767 | 61.59 | temperature | 15.0 | 43200 | < th | dose dependent | no | NA | NA |
| 768 | 61.59 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 4 |
| 794 | 61.62 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 805 | 61.62 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 831 | 61.64 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 1 | 23 |
| 836 | 61.65 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 839 | 61.65 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 3 | 5 |
| 840 | 61.65 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 1 | 7 |
| 852 | 61.66 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 879 | 61.68 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 896 | 61.69 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 23 | 9 |
| 901 | 61.69 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 917 | 61.70 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 16 |
| 958 | 61.73 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 959 | 61.73 | wind | 1.0 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 966 | 61.73 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 987 | 61.75 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 5 | 4 |