BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0295700 Os03g0295700|AK067856
         (899 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0295700  Conserved hypothetical protein                     1761   0.0  
Os07g0511000  Conserved hypothetical protein                      137   3e-32

>Os03g0295700 Conserved hypothetical protein
          Length = 899

 Score = 1761 bits (4560), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 849/887 (95%), Positives = 849/887 (95%)

Query: 13  KYAKHRRIXXXXXXXXXXXXXXXXXLERFDDFTIASSWERFISEIEAICRQWLADGPNIL 72
           KYAKHRRI                 LERFDDFTIASSWERFISEIEAICRQWLADGPNIL
Sbjct: 13  KYAKHRRIGEEEEEEEEEAGEAEEELERFDDFTIASSWERFISEIEAICRQWLADGPNIL 72

Query: 73  TQKGAESVPSFDNLYVVKRELKHGKRVYCMEYHFMKSAKGKHSYWDDDTHSMQLSFGVYE 132
           TQKGAESVPSFDNLYVVKRELKHGKRVYCMEYHFMKSAKGKHSYWDDDTHSMQLSFGVYE
Sbjct: 73  TQKGAESVPSFDNLYVVKRELKHGKRVYCMEYHFMKSAKGKHSYWDDDTHSMQLSFGVYE 132

Query: 133 FLIIAPLSASGVVLDDPESTKLLSSVAIALSNCGSNWPAFVPVHDPSRKAYIGIQNLGTV 192
           FLIIAPLSASGVVLDDPESTKLLSSVAIALSNCGSNWPAFVPVHDPSRKAYIGIQNLGTV
Sbjct: 133 FLIIAPLSASGVVLDDPESTKLLSSVAIALSNCGSNWPAFVPVHDPSRKAYIGIQNLGTV 192

Query: 193 FTRRFEADRIGSQVPIRLMHLEGLHELFLSKFVLSSTDFPARVKVIFSMKLTYRTPEYDY 252
           FTRRFEADRIGSQVPIRLMHLEGLHELFLSKFVLSSTDFPARVKVIFSMKLTYRTPEYDY
Sbjct: 193 FTRRFEADRIGSQVPIRLMHLEGLHELFLSKFVLSSTDFPARVKVIFSMKLTYRTPEYDY 252

Query: 253 YNEETLVSEANESIAESEVANHPKKQWDDDCSWAEWYSAEDPVKGFELTAIWGERVFEET 312
           YNEETLVSEANESIAESEVANHPKKQWDDDCSWAEWYSAEDPVKGFELTAIWGERVFEET
Sbjct: 253 YNEETLVSEANESIAESEVANHPKKQWDDDCSWAEWYSAEDPVKGFELTAIWGERVFEET 312

Query: 313 LEMAEVENASSFDADRWLLHPIVSPYMVDDSIGKFVGFASQLQLLVKAFESSAEAQFLED 372
           LEMAEVENASSFDADRWLLHPIVSPYMVDDSIGKFVGFASQLQLLVKAFESSAEAQFLED
Sbjct: 313 LEMAEVENASSFDADRWLLHPIVSPYMVDDSIGKFVGFASQLQLLVKAFESSAEAQFLED 372

Query: 373 FVAADTSGQENSKXXXXXXXXXXXDRVMKDLFNDEVGNSNYVEAENKYGRAMKGAPSDSL 432
           FVAADTSGQENSK           DRVMKDLFNDEVGNSNYVEAENKYGRAMKGAPSDSL
Sbjct: 373 FVAADTSGQENSKSTVTVPPPSVVDRVMKDLFNDEVGNSNYVEAENKYGRAMKGAPSDSL 432

Query: 433 FAQFCLHALWFGNCHIRAIAVLWIDFVREIRWCWEESERLPRMKSTSSIDLCTCLIHQKL 492
           FAQFCLHALWFGNCHIRAIAVLWIDFVREIRWCWEESERLPRMKSTSSIDLCTCLIHQKL
Sbjct: 433 FAQFCLHALWFGNCHIRAIAVLWIDFVREIRWCWEESERLPRMKSTSSIDLCTCLIHQKL 492

Query: 493 HMLAICIERKKSLSREKGTDHAHEDGISNSVAQNKTRKGSAGVVPSMMLLNTFQEMHAPY 552
           HMLAICIERKKSLSREKGTDHAHEDGISNSVAQNKTRKGSAGVVPSMMLLNTFQEMHAPY
Sbjct: 493 HMLAICIERKKSLSREKGTDHAHEDGISNSVAQNKTRKGSAGVVPSMMLLNTFQEMHAPY 552

Query: 553 TQDALLMTEDMHEERLHAAEAFGNAVGLSGQLERDVLSSDMSAFKAANPDAVFEDFIRWH 612
           TQDALLMTEDMHEERLHAAEAFGNAVGLSGQLERDVLSSDMSAFKAANPDAVFEDFIRWH
Sbjct: 553 TQDALLMTEDMHEERLHAAEAFGNAVGLSGQLERDVLSSDMSAFKAANPDAVFEDFIRWH 612

Query: 613 SPGDWVSEDGAEDSSGWPPKGRLSQRMSEHGNMWRKIWNDAPALPVSEQKFLLDPIREGE 672
           SPGDWVSEDGAEDSSGWPPKGRLSQRMSEHGNMWRKIWNDAPALPVSEQKFLLDPIREGE
Sbjct: 613 SPGDWVSEDGAEDSSGWPPKGRLSQRMSEHGNMWRKIWNDAPALPVSEQKFLLDPIREGE 672

Query: 673 KVIHYLETLRPQQLLEQMVCTVFKSSADILNRTTYGGFKLMKTKMDQLYATLASTLKSLQ 732
           KVIHYLETLRPQQLLEQMVCTVFKSSADILNRTTYGGFKLMKTKMDQLYATLASTLKSLQ
Sbjct: 673 KVIHYLETLRPQQLLEQMVCTVFKSSADILNRTTYGGFKLMKTKMDQLYATLASTLKSLQ 732

Query: 733 GKXXXXXXXXXXKRLCQVFEHIEKLLILATSVHRKLIDAPRLSQAIFADYFNYYLPKMGT 792
           GK          KRLCQVFEHIEKLLILATSVHRKLIDAPRLSQAIFADYFNYYLPKMGT
Sbjct: 733 GKSDISDLSDDLKRLCQVFEHIEKLLILATSVHRKLIDAPRLSQAIFADYFNYYLPKMGT 792

Query: 793 SLESVCYEKEFTAKEKVGMHERDAVSNLFPPPTANQSWRKVLSMGNLLNGHEPIQREIVF 852
           SLESVCYEKEFTAKEKVGMHERDAVSNLFPPPTANQSWRKVLSMGNLLNGHEPIQREIVF
Sbjct: 793 SLESVCYEKEFTAKEKVGMHERDAVSNLFPPPTANQSWRKVLSMGNLLNGHEPIQREIVF 852

Query: 853 SVIERISNGHYSSPTPLSTDEQIETHRMYISGTSNDLWVALSVTSWD 899
           SVIERISNGHYSSPTPLSTDEQIETHRMYISGTSNDLWVALSVTSWD
Sbjct: 853 SVIERISNGHYSSPTPLSTDEQIETHRMYISGTSNDLWVALSVTSWD 899



>Os07g0511000 Conserved hypothetical protein
          Length = 666

 Score =  137 bits (346), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/301 (31%), Positives = 144/301 (47%), Gaps = 36/301 (11%)

Query: 422 RAMKGAPSDSLFAQFCLHALWFGN-CHIRAIAVLWIDFVREIRWCWEESERLPRMKSTSS 480
           + + GAP  S   Q    A   G    +  +A  W   V E++  W + + +PRM   ++
Sbjct: 210 KDLHGAPPGSFTHQI---AETIGKISSVYKMAFFWQSLVLELKKLWSDGQPVPRMPLDAA 266

Query: 481 IDLCTCLIHQKLHMLAICI----------ERKKSLSREKGTD---HAHEDG--------I 519
            DL  CL+HQ++ ++  CI          E   SL +    D   H + +G        I
Sbjct: 267 PDLNCCLLHQEIQVINCCIARKKRRKAAKESLDSLLKRASIDNSNHLYSNGDSPDSEMYI 326

Query: 520 SNSVAQNKTRKGSAGVVPSMMLLNTFQEMHAPYTQDALLMTEDMHEERLHAAEAFGNAVG 579
             S   N  R G+     ++ LL T + +++P  Q+  +MT ++ +E        G+   
Sbjct: 327 KGSAGDNVLRLGADHPSENLTLLETGELVYSPTLQEGPIMTAELIKETEELVLRTGSVGA 386

Query: 580 LSGQLERDVLSSDMSAFKAANPDAVFEDFIRWHSPGDWVSEDGAEDSS----GWPPKGRL 635
              QL      SDM AFKAANP  V EDFIRWHSP DW SED A  S+    G   +GRL
Sbjct: 387 GCSQL-----LSDMQAFKAANPGCVLEDFIRWHSPPDW-SEDCAASSAEVGEGSSRRGRL 440

Query: 636 SQRM-SEHGNMWRKIWNDAPALPVSEQKFLLDPIREGEKVIHYLETLRPQQLLEQMVCTV 694
           S+RM ++ GN+W+++W  A  +P  EQ  + D     E +   LE + P +L EQ++  +
Sbjct: 441 SERMQTKEGNLWKELWGAAKPIPAVEQAPIYDEDLAVESIFDALEVIEPSKLFEQLLAVI 500

Query: 695 F 695
            
Sbjct: 501 L 501



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 29,169,537
Number of extensions: 1204394
Number of successful extensions: 2831
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2828
Number of HSP's successfully gapped: 2
Length of query: 899
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 789
Effective length of database: 11,292,261
Effective search space: 8909593929
Effective search space used: 8909593929
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 161 (66.6 bits)