BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0289400 Os03g0289400|Os03g0289400
         (148 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0289400  Similar to Rhodanese-like family protein            180   3e-46
Os09g0279400  Rhodanese-like domain containing protein             70   7e-13

>Os03g0289400 Similar to Rhodanese-like family protein
          Length = 148

 Score =  180 bits (457), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 87/87 (100%), Positives = 87/87 (100%)

Query: 62  FRLLDVRPEWERARAAVRGSAHAPLFVGDDDTGPVTLLKKWVHFGYIGLWTGQSFTKMND 121
           FRLLDVRPEWERARAAVRGSAHAPLFVGDDDTGPVTLLKKWVHFGYIGLWTGQSFTKMND
Sbjct: 62  FRLLDVRPEWERARAAVRGSAHAPLFVGDDDTGPVTLLKKWVHFGYIGLWTGQSFTKMND 121

Query: 122 RFLDDVAAAAGEGKDAKLLVACGEGLR 148
           RFLDDVAAAAGEGKDAKLLVACGEGLR
Sbjct: 122 RFLDDVAAAAGEGKDAKLLVACGEGLR 148



>Os09g0279400 Rhodanese-like domain containing protein
          Length = 239

 Score = 69.7 bits (169), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 51/87 (58%), Gaps = 2/87 (2%)

Query: 62  FRLLDVRPEWERARAAVRGSAHAPLFVGDDDTGPVTLLKKWVHFGYIGLWTGQSFTKMND 121
           + +LD+R   +R RA ++ SAH PLFV +DD    T++K+ VH  + GL+ G  FTK N 
Sbjct: 68  YTVLDIRDRTQRERAHIKNSAHVPLFVENDDGDIGTIIKRTVHSNFAGLFFGLPFTKRNL 127

Query: 122 RFLDDVAAAAGEGKDAKLLVACGEGLR 148
            F   V        ++KLLV C EGLR
Sbjct: 128 EFTKMVKDKFSP--ESKLLVVCQEGLR 152



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.140    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,605,224
Number of extensions: 140581
Number of successful extensions: 359
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 2
Length of query: 148
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 56
Effective length of database: 12,232,113
Effective search space: 684998328
Effective search space used: 684998328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 151 (62.8 bits)