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Os09g0279400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Rhodanese-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.6 (0.0199) R2 : 0.856
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.74 (0.0532) R2dE : 0.837 R2E : 0.844
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.219 (0.042) R2dN8 : 0.0112 R2N8 : 0.0183
σ : 0.374
deviance : 64.57
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C
peak time of C : --
E
wheather : temperature
threshold : 7.453
memory length : 335
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 16.9
open length of G : 10

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
38.49 0.291 12.5 -0.315 1.16 -1.72 0.693 4.04 -0.191 12.4 14.92 263 18 9.17
46.59 0.318 12.5 -0.487 1.07 -1.79 -1.19 -- -0.241 12.4 14.49 250 18.1 9.18
39.33 0.292 12.5 -0.33 1.13 -1.83 -- 3.5 -0.205 12.4 15.13 244 18.1 9.28
53.21 0.34 12.6 -0.6 1.04 -1.77 -- -- -0.287 12.3 14.01 260 18 9.13
60.33 0.362 12.5 -0.288 -- -2.5 -- 3.47 -0.254 -- 10.62 195 18.2 10.1
79.71 0.419 12.6 -0.73 2.31 -- -0.948 -- -0.392 12.5 -- -- -- --
83.57 0.428 12.6 -0.766 2.31 -- -- -- -0.396 12.5 -- -- -- --
56.2 0.349 12.6 -0.587 -- -2.68 -- -- -0.276 -- 8.244 306 17.4 9.73
63.17 0.37 12.5 -- 0.998 -1.84 -- -- -0.216 12.2 14.41 261 18 9.15
419.04 0.957 12.6 -0.846 -- -- -- -- -0.435 -- -- -- -- --
99.05 0.466 12.5 -- 2.32 -- -- -- -0.311 12.5 -- -- -- --
64.57 0.374 12.6 -- -- -2.74 -- -- -0.219 -- 7.453 335 16.9 10
437.93 0.977 12.6 -- -- -- -- -- -0.341 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 38.63 temperature 15 270 > th dose dependent rect. 18 9
7 43.81 temperature 20 270 > th dose independent rect. 18 9
9 44.13 temperature 20 10 > th dose independent rect. 20 9
26 46.93 temperature 15 10 > th dose dependent rect. 20 9
43 48.70 temperature 30 270 < th dose dependent rect. 16 15
45 48.79 temperature 20 10 > th dose independent rect. 18 11
151 52.60 temperature 25 270 < th dose dependent sin 14 NA
172 52.96 temperature 25 720 < th dose dependent rect. 17 5
205 53.51 temperature 25 720 < th dose dependent rect. 19 2
259 54.27 temperature 15 720 > th dose dependent rect. 16 5
262 54.29 temperature 10 720 > th dose dependent rect. 15 7
344 55.29 temperature 20 90 > th dose independent rect. 9 19
375 55.55 temperature 20 10 > th dose independent rect. 11 18
437 56.17 temperature 15 270 > th dose dependent sin 13 NA
447 56.26 temperature 20 10 > th dose independent rect. 9 20
490 56.58 temperature 20 10 > th dose independent sin 12 NA
492 56.61 temperature 20 10 < th dose independent rect. 18 12
493 56.63 temperature 20 90 > th dose independent sin 13 NA
507 56.76 temperature 20 10 < th dose independent rect. 18 14
511 56.77 atmosphere 1010 270 < th dose independent rect. 18 9
517 56.80 temperature 20 10 < th dose independent sin 12 NA
541 56.93 temperature 20 270 < th dose independent rect. 17 12
566 57.14 temperature 20 90 < th dose independent sin 12 NA
686 57.62 temperature 20 10 < th dose independent rect. 16 14
701 57.68 temperature 20 90 > th dose independent rect. 20 18
715 57.74 temperature 20 10 < th dose independent rect. 16 16
740 57.80 temperature 20 10 > th dose independent rect. 20 18
743 57.81 temperature 20 720 > th dose independent rect. 15 6
906 58.34 temperature 20 720 < th dose independent rect. 15 9
940 58.47 temperature 20 720 < th dose independent rect. 12 12