Os03g0289400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Rhodanese-like family protein.
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Os03g0289400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Rhodanese-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 83.23 | 0.429 | 13 | -0.536 | 1.72 | 0.124 | -0.551 | 1.57 | -0.45 | 20 | 20.5 | 751 | -- | -- |
| 87.47 | 0.439 | 13 | -0.777 | 1.73 | -0.229 | -0.047 | -- | -0.478 | 19.9 | 20.5 | 751 | -- | -- |
| 83.97 | 0.427 | 13 | -0.548 | 1.72 | 0.122 | -- | 1.43 | -0.459 | 20 | 20.5 | 872 | -- | -- |
| 85.7 | 0.431 | 13 | -0.68 | 1.79 | -0.5 | -- | -- | -0.469 | 19.9 | 13.9 | 10731 | -- | -- |
| 241.88 | 0.724 | 12.9 | -0.507 | -- | 0.477 | -- | 1.94 | -0.444 | -- | 20.8 | 690 | -- | -- |
| 89.73 | 0.444 | 13 | -0.836 | 1.74 | -- | -0.0532 | -- | -0.523 | 20 | -- | -- | -- | -- |
| 89.74 | 0.444 | 13 | -0.834 | 1.74 | -- | -- | -- | -0.523 | 20 | -- | -- | -- | -- |
| 184.19 | 0.632 | 13 | -1.43 | -- | 1.05 | -- | -- | -0.799 | -- | 25.9 | 547 | -- | -- |
| 88.79 | 0.439 | 13 | -- | 1.71 | -0.76 | -- | -- | -0.285 | 19.9 | 16.7 | 39047 | -- | -- |
| 255.71 | 0.747 | 13 | -0.851 | -- | -- | -- | -- | -0.545 | -- | -- | -- | -- | -- |
| 108.08 | 0.486 | 13 | -- | 1.75 | -- | -- | -- | -0.43 | 20 | -- | -- | -- | -- |
| 216.08 | 0.685 | 13 | -- | -- | 1.03 | -- | -- | -0.75 | -- | 25.77 | 551 | -- | -- |
| 274.82 | 0.774 | 13 | -- | -- | -- | -- | -- | -0.45 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.46 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 23 | 14 |
| 3 | 77.52 | temperature | 15.0 | 270 | > th | dose independent | rect. | 4 | 17 |
| 6 | 77.56 | temperature | 15.0 | 270 | > th | dose independent | rect. | 3 | 19 |
| 9 | 77.60 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 23 | 9 |
| 11 | 77.76 | radiation | 1.0 | 90 | < th | dose independent | rect. | 23 | 14 |
| 18 | 77.90 | radiation | 1.0 | 90 | < th | dose independent | rect. | 23 | 9 |
| 26 | 78.15 | radiation | 30.0 | 270 | < th | dose independent | rect. | 3 | 19 |
| 29 | 78.26 | radiation | 30.0 | 270 | < th | dose independent | rect. | 3 | 8 |
| 40 | 78.44 | wind | 5.0 | 270 | < th | dose independent | rect. | 21 | 7 |
| 41 | 78.44 | temperature | 15.0 | 270 | > th | dose independent | rect. | 2 | 21 |
| 49 | 78.63 | wind | 5.0 | 270 | < th | dose independent | rect. | 22 | 5 |
| 72 | 79.04 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 17 |
| 73 | 79.07 | wind | 9.0 | 270 | < th | dose dependent | rect. | 21 | 6 |
| 79 | 79.10 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 90 | 79.17 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 5 | 18 |
| 91 | 79.18 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 7 |
| 92 | 79.18 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 7 |
| 93 | 79.18 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 7 |
| 96 | 79.18 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 7 |
| 97 | 79.18 | radiation | 1.0 | 270 | < th | dose independent | rect. | 21 | 7 |
| 103 | 79.18 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 7 |
| 109 | 79.18 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 23 | 15 |
| 119 | 79.26 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 19 |
| 125 | 79.32 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 7 |
| 127 | 79.32 | wind | 9.0 | 90 | < th | dose independent | rect. | 5 | 18 |
| 128 | 79.32 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 7 |
| 129 | 79.33 | temperature | 10.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 130 | 79.33 | temperature | 30.0 | 90 | < th | dose independent | rect. | 23 | 6 |
| 131 | 79.33 | humidity | 50.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 134 | 79.33 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 135 | 79.33 | radiation | 20.0 | 90 | < th | dose independent | rect. | 23 | 6 |
| 141 | 79.34 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 15 |
| 142 | 79.34 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 23 | 6 |
| 143 | 79.35 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 5 |
| 145 | 79.35 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 5 |
| 157 | 79.38 | radiation | 1.0 | 270 | < th | dose independent | rect. | 22 | 5 |
| 177 | 79.40 | wind | 1.0 | 270 | > th | dose independent | rect. | 8 | 9 |
| 184 | 79.48 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 188 | 79.51 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 195 | 79.60 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 19 |
| 214 | 79.70 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 23 | 7 |
| 215 | 79.70 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 23 | 16 |
| 221 | 79.72 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 15 |
| 230 | 79.75 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 23 | 6 |
| 254 | 79.81 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 15 |
| 266 | 79.87 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 7 |
| 267 | 79.87 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 17 |
| 274 | 79.89 | temperature | 20.0 | 90 | > th | dose independent | rect. | 4 | 7 |
| 277 | 79.90 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 23 | 14 |
| 282 | 79.93 | humidity | 80.0 | 30 | > th | dose independent | rect. | 23 | 17 |
| 299 | 79.94 | temperature | 10.0 | 270 | > th | dose independent | rect. | 8 | 9 |
| 300 | 79.94 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 8 | 9 |
| 319 | 79.96 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 19 |
| 320 | 79.97 | wind | 5.0 | 270 | < th | dose independent | rect. | 23 | 3 |
| 321 | 79.97 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 16 |
| 324 | 80.01 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 9 |
| 326 | 80.01 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 9 |
| 329 | 80.02 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 19 |
| 331 | 80.03 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 15 |
| 336 | 80.05 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 17 |
| 345 | 80.09 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 18 |
| 346 | 80.09 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 6 |
| 347 | 80.09 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 18 |
| 349 | 80.10 | wind | 9.0 | 270 | < th | dose independent | rect. | 8 | 9 |
| 360 | 80.15 | humidity | 80.0 | 30 | > th | dose independent | rect. | 23 | 15 |
| 374 | 80.22 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 17 |
| 376 | 80.23 | radiation | 40.0 | 270 | < th | dose independent | rect. | 17 | 15 |
| 377 | 80.23 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 378 | 80.24 | wind | 7.0 | 270 | < th | dose independent | rect. | 9 | 18 |
| 379 | 80.24 | radiation | 10.0 | 30 | < th | dose dependent | sin | 8 | NA |
| 381 | 80.25 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 17 |
| 385 | 80.25 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 17 |
| 396 | 80.28 | wind | 1.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 419 | 80.37 | wind | 5.0 | 270 | < th | dose independent | rect. | 22 | 17 |
| 431 | 80.39 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 19 |
| 434 | 80.39 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 19 |
| 435 | 80.40 | radiation | 1.0 | 90 | > th | dose independent | sin | 8 | NA |
| 470 | 80.51 | radiation | 20.0 | 270 | < th | dose independent | rect. | 17 | 15 |
| 525 | 80.61 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 6 |
| 526 | 80.61 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 528 | 80.62 | temperature | 15.0 | 270 | > th | dose independent | rect. | 15 | 7 |
| 531 | 80.63 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 23 | 6 |
| 547 | 80.65 | temperature | 10.0 | 270 | > th | dose independent | rect. | 23 | 3 |
| 548 | 80.65 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 3 |
| 549 | 80.65 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 3 |
| 552 | 80.65 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 3 |
| 553 | 80.65 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 3 |
| 560 | 80.65 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 23 | 3 |
| 567 | 80.66 | radiation | 1.0 | 90 | < th | dose independent | sin | 8 | NA |
| 568 | 80.66 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 3 |
| 572 | 80.66 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 3 |
| 575 | 80.66 | wind | 9.0 | 270 | < th | dose dependent | rect. | 10 | 17 |
| 591 | 80.71 | temperature | 20.0 | 90 | > th | dose independent | rect. | 19 | 16 |
| 606 | 80.75 | radiation | 30.0 | 10 | < th | dose independent | rect. | 6 | 17 |
| 611 | 80.77 | radiation | 1.0 | 90 | < th | dose independent | rect. | 22 | 21 |
| 616 | 80.78 | temperature | 15.0 | 270 | > th | dose independent | rect. | 9 | 18 |
| 652 | 80.84 | wind | 1.0 | 270 | > th | dose independent | rect. | 15 | 7 |
| 707 | 80.89 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 6 |
| 710 | 80.89 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 6 |
| 711 | 80.89 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 6 |
| 712 | 80.89 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 6 |
| 717 | 80.89 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 8 | 8 |
| 733 | 80.91 | wind | 9.0 | 270 | < th | dose independent | rect. | 2 | 21 |
| 750 | 80.93 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 23 | 3 |
| 763 | 80.95 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 15 |
| 772 | 80.96 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 7 |
| 808 | 81.01 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 8 | 9 |
| 856 | 81.06 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 15 | 7 |
| 872 | 81.09 | wind | 1.0 | 270 | > th | dose independent | rect. | 23 | 16 |
| 880 | 81.10 | radiation | 40.0 | 270 | < th | dose independent | rect. | 13 | 9 |
| 888 | 81.11 | radiation | 30.0 | 270 | < th | dose independent | rect. | 15 | 7 |
| 895 | 81.12 | wind | 1.0 | 270 | > th | dose independent | rect. | 23 | 3 |
| 899 | 81.13 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 22 | 17 |
| 905 | 81.14 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 922 | 81.14 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 15 |
| 923 | 81.14 | temperature | 10.0 | 270 | > th | dose independent | rect. | 22 | 17 |
| 927 | 81.14 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 15 |
| 952 | 81.15 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 955 | 81.16 | temperature | 15.0 | 270 | > th | dose independent | rect. | 14 | 9 |
| 964 | 81.17 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 17 | 15 |
| 997 | 81.24 | wind | 1.0 | 270 | > th | dose independent | rect. | 21 | 7 |
| 1000 | 81.25 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 7 |