BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0287700 Os03g0287700|AK058301
(131 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0287700 Hypothetical protein 236 3e-63
Os03g0826000 Conserved hypothetical protein 175 8e-45
Os03g0819700 Conserved hypothetical protein 83 6e-17
>Os03g0287700 Hypothetical protein
Length = 131
Score = 236 bits (602), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 118/131 (90%), Positives = 118/131 (90%)
Query: 1 SWHSPGCPVGPQVFDRLERKYNKISAWPRPERRLLFDLANTVLSEILAPWKSSRRCCXXX 60
SWHSPGCPVGPQVFDRLERKYNKISAWPRPERRLLFDLANTVLSEILAPWKSSRRCC
Sbjct: 1 SWHSPGCPVGPQVFDRLERKYNKISAWPRPERRLLFDLANTVLSEILAPWKSSRRCCPVW 60
Query: 61 XXXXXXXXXXQTMVRRQEELAVGHPDDKVLDPEWLEVGEDINTVGKQIAKMLHGDLLDEI 120
QTMVRRQEELAVGHPDDKVLDPEWLEVGEDINTVGKQIAKMLHGDLLDEI
Sbjct: 61 GPEGPVEVVWQTMVRRQEELAVGHPDDKVLDPEWLEVGEDINTVGKQIAKMLHGDLLDEI 120
Query: 121 ILEFLSGCVAS 131
ILEFLSGCVAS
Sbjct: 121 ILEFLSGCVAS 131
>Os03g0826000 Conserved hypothetical protein
Length = 758
Score = 175 bits (444), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 91/138 (65%), Positives = 102/138 (73%), Gaps = 7/138 (5%)
Query: 1 SWHSPGCPVGPQVFDRLERKYNKISAWPRPERRLLFDLANTVLSEILAP------W-KSS 53
SW S G VGP VFD+LE KY+K++ WPRP+RRLLFDLAN+VLSEILAP W K S
Sbjct: 621 SWQSSGYLVGPHVFDKLEGKYSKVATWPRPQRRLLFDLANSVLSEILAPCIDTHPWAKLS 680
Query: 54 RRCCXXXXXXXXXXXXXQTMVRRQEELAVGHPDDKVLDPEWLEVGEDINTVGKQIAKMLH 113
R CC QTMVR+QEELAV HPDDK+LDPEWLE GE IN VG IA+MLH
Sbjct: 681 RNCCPVWGPEGPVEVVWQTMVRQQEELAVAHPDDKILDPEWLEFGEGINMVGWHIARMLH 740
Query: 114 GDLLDEIILEFLSGCVAS 131
GDLLD++ILEFLSG VAS
Sbjct: 741 GDLLDDVILEFLSGFVAS 758
>Os03g0819700 Conserved hypothetical protein
Length = 586
Score = 82.8 bits (203), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 69/115 (60%), Gaps = 9/115 (7%)
Query: 7 CPVGPQVFDRLERKYNKISAWPRPERRLLFDLANTVLSEILA------PW-KSSRRCCXX 59
CP G VF++LE+KY K++ W R +R+L+FD+ NT+LSEILA PW KS+R+
Sbjct: 458 CPAGYDVFEKLEKKYMKVAEWSRSDRKLIFDMVNTILSEILAPCLDMHPWVKSARKMAPV 517
Query: 60 XXXXXXXXXXXQTMVRRQEELAVG--HPDDKVLDPEWLEVGEDINTVGKQIAKML 112
Q +V+R+EEL + P+ K LD +W ++ + I+ VG+ + M+
Sbjct: 518 WGSEGLLEKILQMLVQRREELGLSKTKPEKKALDRKWPDLSDCIDRVGRDVENMI 572
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.138 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,368,678
Number of extensions: 144514
Number of successful extensions: 329
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 3
Length of query: 131
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 42
Effective length of database: 12,388,755
Effective search space: 520327710
Effective search space used: 520327710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 150 (62.4 bits)