BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0283200 Os03g0283200|AF237487
(243 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0283200 Similar to IN2-1 protein 498 e-141
Os03g0283100 Similar to In2-1 protein 347 3e-96
Os03g0283000 Similar to In2-1 protein 237 5e-63
AK059972 98 6e-21
>Os03g0283200 Similar to IN2-1 protein
Length = 243
Score = 498 bits (1281), Expect = e-141, Method: Compositional matrix adjust.
Identities = 243/243 (100%), Positives = 243/243 (100%)
Query: 1 MAAAAAPRSSGKEALPAALGSASEPPRLFDGTTRLYICYFCPFAQRAWIIRNFKGLQDKI 60
MAAAAAPRSSGKEALPAALGSASEPPRLFDGTTRLYICYFCPFAQRAWIIRNFKGLQDKI
Sbjct: 1 MAAAAAPRSSGKEALPAALGSASEPPRLFDGTTRLYICYFCPFAQRAWIIRNFKGLQDKI 60
Query: 61 ELVGIDLQDKPAWYKEKVYEQGTVPSLEHNGKIMGESLDLIKYIDSHFEGPALLPEDPEK 120
ELVGIDLQDKPAWYKEKVYEQGTVPSLEHNGKIMGESLDLIKYIDSHFEGPALLPEDPEK
Sbjct: 61 ELVGIDLQDKPAWYKEKVYEQGTVPSLEHNGKIMGESLDLIKYIDSHFEGPALLPEDPEK 120
Query: 121 RQFADELIAYANAFTKALYSPLISKADLSAETVAALDKIEAALSKFGDGPFFLGQFSLVD 180
RQFADELIAYANAFTKALYSPLISKADLSAETVAALDKIEAALSKFGDGPFFLGQFSLVD
Sbjct: 121 RQFADELIAYANAFTKALYSPLISKADLSAETVAALDKIEAALSKFGDGPFFLGQFSLVD 180
Query: 181 IAYVTIIERIQIYYSHIRKYEITNGRPNLEKFIEEINRIEAYTQTKNDPLYLLDLAKTHL 240
IAYVTIIERIQIYYSHIRKYEITNGRPNLEKFIEEINRIEAYTQTKNDPLYLLDLAKTHL
Sbjct: 181 IAYVTIIERIQIYYSHIRKYEITNGRPNLEKFIEEINRIEAYTQTKNDPLYLLDLAKTHL 240
Query: 241 KVA 243
KVA
Sbjct: 241 KVA 243
>Os03g0283100 Similar to In2-1 protein
Length = 244
Score = 347 bits (891), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 162/235 (68%), Positives = 196/235 (83%)
Query: 9 SSGKEALPAALGSASEPPRLFDGTTRLYICYFCPFAQRAWIIRNFKGLQDKIELVGIDLQ 68
SS KE LP +L S+SEPP LFDGTTRLY+ Y CP+AQRAWI RN+KGLQDKI++V IDL
Sbjct: 10 SSEKEVLPPSLTSSSEPPPLFDGTTRLYVAYHCPYAQRAWIARNYKGLQDKIKIVAIDLA 69
Query: 69 DKPAWYKEKVYEQGTVPSLEHNGKIMGESLDLIKYIDSHFEGPALLPEDPEKRQFADELI 128
D+PAWYKEKVY + VPSLEHN ++ GESLDL+KYID++FEGPALLP+D EK+QFA+EL+
Sbjct: 70 DRPAWYKEKVYPENKVPSLEHNNQVKGESLDLVKYIDTNFEGPALLPDDSEKQQFAEELL 129
Query: 129 AYANAFTKALYSPLISKADLSAETVAALDKIEAALSKFGDGPFFLGQFSLVDIAYVTIIE 188
AY +AF KA YS +++K D+ E VAALDKIEAALSKF DGPFFLGQFSLVDIAYV IE
Sbjct: 130 AYTDAFNKASYSSIVAKGDVCDEAVAALDKIEAALSKFNDGPFFLGQFSLVDIAYVPFIE 189
Query: 189 RIQIYYSHIRKYEITNGRPNLEKFIEEINRIEAYTQTKNDPLYLLDLAKTHLKVA 243
R QI++S I+ Y+IT GRPNL+KFIEE+N+I AYT+TK DP +LL+ K L +A
Sbjct: 190 RFQIFFSGIKNYDITKGRPNLQKFIEEVNKIHAYTETKQDPQFLLEHTKKRLGIA 244
>Os03g0283000 Similar to In2-1 protein
Length = 294
Score = 237 bits (605), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 119/201 (59%), Positives = 154/201 (76%), Gaps = 1/201 (0%)
Query: 40 FCPFAQRAWIIRNFKGLQDKIELVGIDLQDKPAWYKEKVYEQGTVPSLEHNGKIMGESLD 99
CP+AQRAWI RN+KGLQ+KI+LV +D D+PAWYKE VY + T+PSLEHN KI+GESLD
Sbjct: 35 ICPYAQRAWIARNYKGLQEKIKLVPMDTNDRPAWYKE-VYPKNTLPSLEHNNKIIGESLD 93
Query: 100 LIKYIDSHFEGPALLPEDPEKRQFADELIAYANAFTKALYSPLISKADLSAETVAALDKI 159
LIKYID +F GP L P+D EK++ A+EL+AY++ F +A+ S LISK ++AE AALD I
Sbjct: 94 LIKYIDINFAGPRLTPDDSEKQRLAEELLAYSDIFNQAVRSALISKDAMTAEAAAALDNI 153
Query: 160 EAALSKFGDGPFFLGQFSLVDIAYVTIIERIQIYYSHIRKYEITNGRPNLEKFIEEINRI 219
E +LSKF DGPFFLGQFSLVDIAY I+ Q ++ I+ Y+IT GR N++ FI+E+N+I
Sbjct: 154 EFSLSKFDDGPFFLGQFSLVDIAYAPFIDGFQTLFAGIKNYDITEGRANIQIFIKELNKI 213
Query: 220 EAYTQTKNDPLYLLDLAKTHL 240
+AY TK DP ++ L K L
Sbjct: 214 DAYMHTKQDPSEVIALTKKKL 234
>AK059972
Length = 224
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 109/209 (52%), Gaps = 13/209 (6%)
Query: 31 GTTRLYICYFCPFAQRAWIIRNFKGLQDK--IELVGIDLQDKPAWYKEKVYEQGTVPSLE 88
+L+I CP+A RA++ KGL K IELV + L P WY + V + TVP+L
Sbjct: 6 AAAQLFIHKVCPYAHRAYLAATEKGLIAKGAIELVEVSLP-TPDWYNKDVNPRETVPALR 64
Query: 89 -HNGKIMGESLDLIKYIDSHFEGPALLPEDPEKRQFADELIAYANAFTKALYSPLISKAD 147
NG+++ ESL +++Y+D F LLP+DP+ R +A ++ LY + K +
Sbjct: 65 LANGQVVPESLIVVQYLDDAFPEVPLLPKDPKDRADVRVFVADFDSAIGGLYKIIFEKDE 124
Query: 148 -LSAETV-AALDK---IEAALSKFGDGPFFLG-QFSLVDIAYVTIIERIQIYYSHIRKYE 201
+ AE V +ALD IE AL GPFFLG QFS DIA + I+R + +R +
Sbjct: 125 KVRAELVKSALDDIAYIERALVAKSAGPFFLGEQFSYADIAALPFIDRFRHTLLELRGVD 184
Query: 202 ITNGRPNLEKFI---EEINRIEAYTQTKN 227
I P L I E+ +A QTK+
Sbjct: 185 ILANAPRLTALIAAAEKRPSFQATAQTKD 213
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.137 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,288,703
Number of extensions: 345320
Number of successful extensions: 1140
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1150
Number of HSP's successfully gapped: 4
Length of query: 243
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 145
Effective length of database: 11,918,829
Effective search space: 1728230205
Effective search space used: 1728230205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)