Os03g0283100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to In2-1 protein.
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Os03g0283100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to In2-1 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.93 | 0.315 | 12.6 | -0.169 | 0.867 | -0.595 | 0.968 | -0.791 | -0.337 | 14.4 | 70 | 1436 | -- | -- |
| 45.65 | 0.315 | 12.6 | -0.278 | 0.857 | -0.67 | 0.989 | -- | -0.386 | 14.4 | 71 | 1422 | -- | -- |
| 47.42 | 0.321 | 12.6 | -0.108 | 0.851 | -0.601 | -- | -0.928 | -0.328 | 14.6 | 71.13 | 1471 | -- | -- |
| 49.05 | 0.326 | 12.6 | -0.262 | 0.851 | -0.637 | -- | -- | -0.374 | 14.6 | 71.34 | 1429 | -- | -- |
| 63.91 | 0.372 | 12.6 | -0.166 | -- | -0.667 | -- | -0.502 | -0.292 | -- | 76 | 130 | -- | -- |
| 62.44 | 0.37 | 12.6 | -0.146 | 0.844 | -- | 0.813 | -- | -0.282 | 14.3 | -- | -- | -- | -- |
| 64.78 | 0.377 | 12.6 | -0.124 | 0.85 | -- | -- | -- | -0.276 | 14.5 | -- | -- | -- | -- |
| 65.3 | 0.376 | 12.6 | -0.187 | -- | -0.669 | -- | -- | -0.294 | -- | 75 | 130 | -- | -- |
| 50.68 | 0.332 | 12.6 | -- | 0.857 | -0.6 | -- | -- | -0.34 | 14.6 | 71.17 | 1425 | -- | -- |
| 107.21 | 0.484 | 12.6 | -0.16 | -- | -- | -- | -- | -0.297 | -- | -- | -- | -- | -- |
| 65.18 | 0.378 | 12.6 | -- | 0.852 | -- | -- | -- | -0.262 | 14.5 | -- | -- | -- | -- |
| 66.23 | 0.379 | 12.6 | -- | -- | -0.667 | -- | -- | -0.274 | -- | 75.77 | 130 | -- | -- |
| 107.89 | 0.485 | 12.6 | -- | -- | -- | -- | -- | -0.28 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.32 | humidity | 90 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 2 | 41.46 | humidity | 50 | 1440 | > th | dose dependent | rect. | 10 | 2 |
| 14 | 42.02 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 19 | 42.13 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 108 | 43.25 | humidity | 80 | 1440 | < th | dose dependent | sin | 5 | NA |
| 126 | 43.44 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 19 |
| 130 | 43.48 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 149 | 43.56 | humidity | 70 | 1440 | > th | dose independent | rect. | 21 | 17 |
| 204 | 43.80 | humidity | 70 | 1440 | > th | dose independent | sin | 4 | NA |
| 287 | 44.19 | humidity | 50 | 1440 | > th | dose dependent | sin | 2 | NA |
| 357 | 44.50 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 21 |
| 359 | 44.51 | humidity | 70 | 1440 | < th | dose independent | rect. | 19 | 19 |
| 382 | 44.60 | humidity | 70 | 1440 | < th | dose independent | sin | 7 | NA |
| 468 | 44.76 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 496 | 44.82 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 588 | 44.94 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 655 | 44.98 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 2 |
| 948 | 45.57 | humidity | 70 | 1440 | < th | dose independent | rect. | 13 | 23 |