Os03g0283200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to IN2-1 protein.
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Os03g0283200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to IN2-1 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 720.41 | 1.26 | 5 | 2.14 | 1.25 | 3.18 | 0.248 | -52.3 | -1.58 | 6.62 | 29.93 | 1452 | 17.8 | 17.3 |
| 1048.8 | 1.52 | 6.04 | -5.2 | 1.13 | 0.976 | 1.99 | -- | -2.32 | 9.14 | 33.35 | 47520 | 18.2 | 17.7 |
| 719.23 | 1.25 | 5 | 2.08 | 1.24 | 3.16 | -- | -52.1 | -1.58 | 6.62 | 29.92 | 1453 | 17.9 | 17.3 |
| 975.06 | 1.45 | 6.04 | -4.59 | 1.13 | 1.02 | -- | -- | -2.32 | 7.18 | 33.8 | 47520 | 18.2 | 17.7 |
| 792.82 | 1.31 | 5.01 | 2.3 | -- | 3.08 | -- | -52.4 | -1.39 | -- | 29.8 | 1455 | 17.9 | 17.3 |
| 1059.71 | 1.53 | 6.02 | -5.14 | 1.63 | -- | -1.55 | -- | -2.22 | 5.36 | -- | -- | -- | -- |
| 1064.22 | 1.53 | 6.01 | -5.14 | 1.64 | -- | -- | -- | -2.21 | 5.72 | -- | -- | -- | -- |
| 1003.04 | 1.48 | 6.05 | -3.94 | -- | 2.06 | -- | -- | -2.54 | -- | 33.62 | 47520 | 18.2 | 17.6 |
| 1050.16 | 1.51 | 6.04 | -- | 1.2 | 3.32 | -- | -- | -2.52 | 7.06 | 33.4 | 47520 | 18.2 | 17.6 |
| 1203.19 | 1.62 | 6.04 | -5.08 | -- | -- | -- | -- | -2.18 | -- | -- | -- | -- | -- |
| 1759.41 | 1.96 | 5.88 | -- | 1.56 | -- | -- | -- | -1.64 | 5.87 | -- | -- | -- | -- |
| 1107.12 | 1.55 | 6.15 | -- | -- | 3.71 | -- | -- | -2.67 | -- | 33.6 | 47520 | 18.4 | 17.6 |
| 1885.1 | 2.03 | 5.91 | -- | -- | -- | -- | -- | -1.61 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 742.82 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 2 | 743.75 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 3 | 747.42 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 10 |
| 4 | 747.55 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 6 | 747.60 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 46 | 751.33 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 71 | 752.43 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 73 | 752.47 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 21 | NA |
| 83 | 752.71 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 116 | 754.41 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 173 | 755.47 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 179 | 755.54 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 10 | 18 |
| 230 | 756.40 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 8 | 20 |
| 253 | 756.77 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 23 | 22 |
| 254 | 756.78 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 256 | 756.82 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 258 | 756.82 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 1 | 20 |
| 274 | 757.00 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 10 |
| 407 | 758.35 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 419 | 758.40 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 420 | 758.41 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 482 | 758.99 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 517 | 759.63 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 574 | 760.78 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 618 | 761.56 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 650 | 761.99 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 17 | 15 |
| 657 | 762.11 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 17 | 4 |
| 671 | 762.30 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 17 |
| 686 | 762.54 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 712 | 763.08 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 14 | 2 |
| 755 | 763.93 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 782 | 764.33 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 794 | 764.64 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 12 | 4 |
| 822 | 765.32 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 850 | 765.74 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 867 | 766.07 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 880 | 766.21 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 883 | 766.26 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 884 | 766.26 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 900 | 766.69 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 917 | 766.94 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 949 | 767.56 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 972 | 768.20 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 18 | 17 |
| 987 | 768.49 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 17 | 16 |