BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0283200 Os03g0283200|AF237487
(243 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G02790.1 | chr5:632877-634858 FORWARD LENGTH=236 274 3e-74
AT3G55040.1 | chr3:20398718-20400305 REVERSE LENGTH=293 274 3e-74
AT5G02780.1 | chr5:630957-632485 FORWARD LENGTH=238 266 1e-71
AT1G19570.1 | chr1:6773462-6774413 REVERSE LENGTH=214 65 3e-11
AT1G75270.1 | chr1:28250255-28251237 REVERSE LENGTH=214 52 4e-07
AT5G62480.1 | chr5:25088775-25089566 REVERSE LENGTH=241 48 5e-06
>AT5G02790.1 | chr5:632877-634858 FORWARD LENGTH=236
Length = 235
Score = 274 bits (701), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 136/232 (58%), Positives = 165/232 (71%), Gaps = 2/232 (0%)
Query: 6 APRSSGKEALPAALGSASEPPRLFDGTTRLYICYFCPFAQRAWIIRNFKGLQDKIELVGI 65
AP E PA L + S+PP LFDGTTRLY Y CPFAQR WI RNFKGLQ+KI+LV +
Sbjct: 2 APSFIFVEDRPAPLDATSDPPSLFDGTTRLYTSYVCPFAQRVWITRNFKGLQEKIKLVPL 61
Query: 66 DLQDKPAWYKEKVYEQGTVPSLEHNGKIMGESLDLIKYIDSHFEGPALLPEDPEKRQFAD 125
DL ++PAWYKEKVY + VP+LEHNGKI+GESLDLIKY+D+ FEGP+L PED KR+F D
Sbjct: 62 DLGNRPAWYKEKVYPENKVPALEHNGKIIGESLDLIKYLDNTFEGPSLYPEDHAKREFGD 121
Query: 126 ELIAYANAFTKALYSPLISKADLSAETVAALDKIEAALSKFGDGPFFLGQFSLVDIAYVT 185
EL+ Y + F K +Y L K D S ET LD +E AL KF DGPFFLGQ SLVDIAY+
Sbjct: 122 ELLKYTDTFVKTMYVSL--KGDPSKETAPVLDYLENALYKFDDGPFFLGQLSLVDIAYIP 179
Query: 186 IIERIQIYYSHIRKYEITNGRPNLEKFIEEINRIEAYTQTKNDPLYLLDLAK 237
IER Q + + K +IT RP L +IEEIN+ + Y QTK DP ++++ K
Sbjct: 180 FIERFQTVLNELFKCDITAERPKLSAWIEEINKSDGYAQTKMDPKEIVEVFK 231
>AT3G55040.1 | chr3:20398718-20400305 REVERSE LENGTH=293
Length = 292
Score = 274 bits (700), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 131/223 (58%), Positives = 174/223 (78%), Gaps = 2/223 (0%)
Query: 19 LGSASEPPRLFDGTTRLYICYFCPFAQRAWIIRNFKGLQDKIELVGIDLQDKPAWYKEKV 78
L S+SEP ++FDG+TRLYI Y CPFAQRAWI RN+KGLQ+KIELV IDL+++PAWYKEKV
Sbjct: 67 LDSSSEPVQVFDGSTRLYISYTCPFAQRAWIARNYKGLQNKIELVPIDLKNRPAWYKEKV 126
Query: 79 YEQGTVPSLEHNGKIMGESLDLIKYIDSHFEGPALLPEDPEKRQFADELIAYANAFTKAL 138
Y VP+LEHN +++GESLDLIKYID++FEGP+L P+ EK+ ADEL++Y ++F+KA+
Sbjct: 127 YSANKVPALEHNNRVLGESLDLIKYIDTNFEGPSLTPDGLEKQVVADELLSYTDSFSKAV 186
Query: 139 YSPLISKADLSAETVAALDKIEAALSKFGDGPFFLGQFSLVDIAYVTIIERIQIYYSHIR 198
S L + D +A V A D IE ALSKF +GPFFLGQFSLVD+AY IER ++ S +
Sbjct: 187 RSTL-NGTDTNAADV-AFDYIEQALSKFNEGPFFLGQFSLVDVAYAPFIERFRLILSDVM 244
Query: 199 KYEITNGRPNLEKFIEEINRIEAYTQTKNDPLYLLDLAKTHLK 241
+IT+GRPNL +I+E+N+IEAYT+T+ DP L++ K ++
Sbjct: 245 NVDITSGRPNLALWIQEMNKIEAYTETRQDPQELVERYKRRVQ 287
>AT5G02780.1 | chr5:630957-632485 FORWARD LENGTH=238
Length = 237
Score = 266 bits (679), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 128/223 (57%), Positives = 161/223 (72%), Gaps = 3/223 (1%)
Query: 19 LGSASEPPRLFDGTTRLYICYFCPFAQRAWIIRNFKGLQDKIELVGIDLQDKPAWYKEKV 78
L + S+PP LFDGTTRLYI Y CPFAQR WI RN KGLQD+I+LV IDL ++PAW KEKV
Sbjct: 17 LDATSDPPALFDGTTRLYISYTCPFAQRVWITRNLKGLQDEIKLVPIDLPNRPAWLKEKV 76
Query: 79 YEQGTVPSLEHNGKIMGESLDLIKYIDSHFEGPALLPEDPEKRQFADELIAYAN-AFTKA 137
VP+LEHNGKI GESLDLIKY+DS+F+GP+L PED KR+F +EL+ Y + F K
Sbjct: 77 NPANKVPALEHNGKITGESLDLIKYVDSNFDGPSLYPEDSAKREFGEELLKYVDETFVKT 136
Query: 138 LYSPLISKADLSAETVAALDKIEAALSKFGDGPFFLGQFSLVDIAYVTIIERIQIYYSHI 197
++ K D ET +A D +E AL KF DGPFFLG+ SLVDIAY+ IER Q++ +
Sbjct: 137 VFGSF--KGDPVKETASAFDHVENALKKFDDGPFFLGELSLVDIAYIPFIERFQVFLDEV 194
Query: 198 RKYEITNGRPNLEKFIEEINRIEAYTQTKNDPLYLLDLAKTHL 240
KYEI GRPNL +IE++N++ AYTQTK D Y+++ K +
Sbjct: 195 FKYEIIIGRPNLAAWIEQMNKMVAYTQTKTDSEYVVNYFKRFM 237
>AT1G19570.1 | chr1:6773462-6774413 REVERSE LENGTH=214
Length = 213
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 96/195 (49%), Gaps = 12/195 (6%)
Query: 41 CPFAQRAWIIRNFKGLQDKIELVGIDLQDKPAWYKEKVYEQGTVPSLEHNGKIMGESLDL 100
CPF+QRA + K L KI L I+L DKP W+ + + QG VP L+ + K + +S +
Sbjct: 20 CPFSQRALLTLEEKSLTYKIHL--INLSDKPQWFLD-ISPQGKVPVLKIDDKWVTDSDVI 76
Query: 101 IKYIDSHFEGPALLPEDP-EKRQFADELIAYANAFTKALYSPLISKADLSAETVAALDKI 159
+ ++ + P L + P E + F K+ S S+ L E L+ +
Sbjct: 77 VGILEEKYPDPPL--KTPAEFASVGSNIFGTFGTFLKSKDSNDGSEHALLVE----LEAL 130
Query: 160 EAALSKFGDGPFFLGQ-FSLVDIAYVTIIERIQIYYSHIRKYEITNGRPNLEKFIEEINR 218
E L K DGPF G+ S VD++ + +Q+ H + + + P++ +++ +
Sbjct: 131 ENHL-KSHDGPFIAGERVSAVDLSLAPKLYHLQVALGHFKSWSVPESFPHVHNYMKTLFS 189
Query: 219 IEAYTQTKNDPLYLL 233
++++ +TK + Y++
Sbjct: 190 LDSFEKTKTEEKYVI 204
>AT1G75270.1 | chr1:28250255-28251237 REVERSE LENGTH=214
Length = 213
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 87/189 (46%), Gaps = 14/189 (7%)
Query: 41 CPFAQRAWIIRNFKGLQDKIELVGIDLQDKPAWYKEKVYEQGTVPSLEHNGKIMGESLDL 100
CPF+QR + K L K L I++ DKP W+ + + +G VP ++ +GK + +S +
Sbjct: 20 CPFSQRVLLTLEEKKLPYKTHL--INVSDKPQWFLD-ISPEGKVPVVKLDGKWVADSDVI 76
Query: 101 IKYIDSHFEGPALLPEDPEKRQFADELIAYANAFTKALYSPLISKADLSAETVAALDKIE 160
+ ++ + P+L + E + + A + L SK A +D++E
Sbjct: 77 VGLLEEKYPEPSL--------KTPPEFASVGSKIFGAFVTFLKSKDANDGSEKALVDELE 128
Query: 161 AALS--KFGDGPFFLGQ-FSLVDIAYVTIIERIQIYYSHIRKYEITNGRPNLEKFIEEIN 217
A + K GPF G+ + VD++ + +++ H + + + ++ + + +
Sbjct: 129 ALENHLKTHSGPFVAGEKITAVDLSLAPKLYHLEVALGHYKNWSVPESLTSVRNYAKALF 188
Query: 218 RIEAYTQTK 226
E++ TK
Sbjct: 189 SRESFENTK 197
>AT5G62480.1 | chr5:25088775-25089566 REVERSE LENGTH=241
Length = 240
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 20/168 (11%)
Query: 35 LYICYFCPFAQRAWIIRNFKGLQDKIELVGIDLQDKPAWYKEKVYEQGTVPSLEHNGKIM 94
L+ + P+++R + K + + V DLQ+K +P L HNGK +
Sbjct: 11 LHGSFASPYSKRIELALRLKSI--PYQFVQEDLQNKSQTLLRYNPVHKKIPVLVHNGKPI 68
Query: 95 GESLDLIKYIDSHF-EGPALLPEDPEKRQFADELIAYANAFTKALYSPLISKADLSA-ET 152
ESL +I+YID + GP +LPEDP +R ++ +AN LY +I E
Sbjct: 69 SESLFIIEYIDETWSNGPHILPEDPYRR---SKVRFWANYIQLHLYDLVIKVVKSEGEEQ 125
Query: 153 VAALDKIEAALSKF-------------GDGPFFLGQFSLVDIAYVTII 187
AL +++ LS G+ SLVDI T++
Sbjct: 126 KKALTEVKEKLSVIEKEGLKEIFSDTDGEPTVTNETMSLVDIVMCTLL 173
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.137 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,320,517
Number of extensions: 226495
Number of successful extensions: 593
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 599
Number of HSP's successfully gapped: 6
Length of query: 243
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 147
Effective length of database: 8,474,633
Effective search space: 1245771051
Effective search space used: 1245771051
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)