BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0270700 Os03g0270700|AK070218
(540 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0270700 Conserved hypothetical protein 950 0.0
Os01g0103800 Conserved hypothetical protein 822 0.0
Os02g0822000 Conserved hypothetical protein 98 2e-20
>Os03g0270700 Conserved hypothetical protein
Length = 540
Score = 950 bits (2455), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/540 (87%), Positives = 473/540 (87%)
Query: 1 PEQPRLQIRKGYSRGATGAVVARGSSSTRXXXXXXXXXXXXXXXXXXXXXXXRFHSQPPQ 60
PEQPRLQIRKGYSRGATGAVVARGSSSTR RFHSQPPQ
Sbjct: 1 PEQPRLQIRKGYSRGATGAVVARGSSSTRPANGAVAINAAAPAVGSAPAEVARFHSQPPQ 60
Query: 61 QDRQSRWAGCFSALSCFGSQKGGKRIVPAARIPDGNASTSRGNAHQSGSNSNQNVXXXXX 120
QDRQSRWAGCFSALSCFGSQKGGKRIVPAARIPDGNASTSRGNAHQSGSNSNQNV
Sbjct: 61 QDRQSRWAGCFSALSCFGSQKGGKRIVPAARIPDGNASTSRGNAHQSGSNSNQNVALNLS 120
Query: 121 XXXXXXXXXXXXXXXXXXTAQSPNRFLSISANSPGGPTSNMFAVGPYANEPQLVSPPVFS 180
TAQSPNRFLSISANSPGGPTSNMFAVGPYANEPQLVSPPVFS
Sbjct: 121 LLAPPSSPASFSNSAIPSTAQSPNRFLSISANSPGGPTSNMFAVGPYANEPQLVSPPVFS 180
Query: 181 TYTTEPSTAPLTPPPELTHATTPSSPDVPYARFLFSAMDLKTAGKDHNMPYLSTAYSGGS 240
TYTTEPSTAPLTPPPELTHATTPSSPDVPYARFLFSAMDLKTAGKDHNMPYLSTAYSGGS
Sbjct: 181 TYTTEPSTAPLTPPPELTHATTPSSPDVPYARFLFSAMDLKTAGKDHNMPYLSTAYSGGS 240
Query: 241 GLQAXXXXXXXXXXXXXXXXXXXXXRTGLSSPIPEQEVPTAHWKTSRSACDTPYSRASPI 300
GLQA RTGLSSPIPEQEVPTAHWKTSRSACDTPYSRASPI
Sbjct: 241 GLQASYPLYPESPSSSLISPASATPRTGLSSPIPEQEVPTAHWKTSRSACDTPYSRASPI 300
Query: 301 PEQEVPTAQWKTSRSACDTPYSRNSPSNIFGLDSAASRNYMLDNNFFRPAASAQFYLDQA 360
PEQEVPTAQWKTSRSACDTPYSRNSPSNIFGLDSAASRNYMLDNNFFRPAASAQFYLDQA
Sbjct: 301 PEQEVPTAQWKTSRSACDTPYSRNSPSNIFGLDSAASRNYMLDNNFFRPAASAQFYLDQA 360
Query: 361 QQSFPYNNGGRISVSRDKQDAEEVEAYRASFGFSADEIVTTQAYVEIPDALDEGFSISPF 420
QQSFPYNNGGRISVSRDKQDAEEVEAYRASFGFSADEIVTTQAYVEIPDALDEGFSISPF
Sbjct: 361 QQSFPYNNGGRISVSRDKQDAEEVEAYRASFGFSADEIVTTQAYVEIPDALDEGFSISPF 420
Query: 421 GNNAPATEVDKPLFNVKVTTSPKKSADQLSNDSPHNVVHLDIFKGTKGGDLSEDEGVVKD 480
GNNAPATEVDKPLFNVKVTTSPKKSADQLSNDSPHNVVHLDIFKGTKGGDLSEDEGVVKD
Sbjct: 421 GNNAPATEVDKPLFNVKVTTSPKKSADQLSNDSPHNVVHLDIFKGTKGGDLSEDEGVVKD 480
Query: 481 CHPFRKAMDEISLKPIEVRKKVQPGQSSSSDAEIEYRRARSLREANGVLSWRSTLARQLQ 540
CHPFRKAMDEISLKPIEVRKKVQPGQSSSSDAEIEYRRARSLREANGVLSWRSTLARQLQ
Sbjct: 481 CHPFRKAMDEISLKPIEVRKKVQPGQSSSSDAEIEYRRARSLREANGVLSWRSTLARQLQ 540
>Os01g0103800 Conserved hypothetical protein
Length = 509
Score = 822 bits (2123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/489 (83%), Positives = 419/489 (85%), Gaps = 2/489 (0%)
Query: 53 RFHSQPPQQDRQSRWAGCFSALSCFGSQKGGKRIVPAARIPDGNASTSRGNAHQSGSNSN 112
RFHS PPQQDR+S WAGC S LSCFGSQKGGKRIVPAAR+PDGNASTSRGNAHQSG+NSN
Sbjct: 22 RFHSHPPQQDRRSGWAGCLSGLSCFGSQKGGKRIVPAARVPDGNASTSRGNAHQSGANSN 81
Query: 113 QNVXXXXXXXXXXXXXXXXXXXXXXXTAQSPNRFLSISANSPGGPTSNMFAVGPYANEPQ 172
Q+ TAQSPN FLSISANSPGGPTSNMFAVGPYANEPQ
Sbjct: 82 QSAALNLSLLAPPSSPVSFSNSAIPSTAQSPNCFLSISANSPGGPTSNMFAVGPYANEPQ 141
Query: 173 LVSPPVFSTYTTEPSTAPLTPPPELTHATTPSSPDVPYARFLFSAMDLKTAGKDHNMPYL 232
LVSPPVFSTYTTEPSTAPLTPPPEL HATTPSSPDVPYARFL S+MDLKTAGKDHNMPYL
Sbjct: 142 LVSPPVFSTYTTEPSTAPLTPPPELAHATTPSSPDVPYARFLLSSMDLKTAGKDHNMPYL 201
Query: 233 STAYSGGSGLQAXXXXXXXXXXXXXXXXXXXXXRTGLSSPIPEQEVPTAHWKTSRSACDT 292
STAYSGGSGLQA RTGLSSPIPEQEVPTAHWKTSRSACDT
Sbjct: 202 STAYSGGSGLQASYPLYPESPSSSLISPASATPRTGLSSPIPEQEVPTAHWKTSRSACDT 261
Query: 293 PYSRASPIPEQEVPTAQWKTSRSACDTPYSRNSPSNIFGLDSAASRNYMLDNNFFRPAAS 352
PYSRASPIPEQEV TA WKTSRSACDTPYSRNSPSNIFGLDSAASRNYMLDNNFFRPAAS
Sbjct: 262 PYSRASPIPEQEVCTAHWKTSRSACDTPYSRNSPSNIFGLDSAASRNYMLDNNFFRPAAS 321
Query: 353 AQFYLDQAQQSFPYNNGGRISVSRDKQDAEEVEAYRASFGFSADEIVTTQAYVEIPDALD 412
AQFYLDQAQQSFPYNNGGRISVS+DKQD EEVEAYRASFGFSADEIVTTQ YVEIPDALD
Sbjct: 322 AQFYLDQAQQSFPYNNGGRISVSKDKQDVEEVEAYRASFGFSADEIVTTQTYVEIPDALD 381
Query: 413 EGFSISPFGNNAPATEVDKPLFNVKVTTSPKKSADQ-LSNDSPHNVVHLDIFKGTKGGDL 471
EGFSISPFGNNAPATEVDK LFNVKV T PKKS +Q LSN SP NVVHLDIFKGTKGGD+
Sbjct: 382 EGFSISPFGNNAPATEVDKSLFNVKVITGPKKSTEQKLSNGSPQNVVHLDIFKGTKGGDV 441
Query: 472 SEDEGVVKDCHPFRKAMDEISLKPIEVRKKVQPGQSSSSDAEIEYRRARSLREANGVLSW 531
EDEG+VKDCHPFRK DEISLKPIEVRKKV GQ S SDAEIEYRRARSLREANGV+SW
Sbjct: 442 CEDEGMVKDCHPFRKGRDEISLKPIEVRKKVGGGQ-SCSDAEIEYRRARSLREANGVVSW 500
Query: 532 RSTLARQLQ 540
RSTLARQLQ
Sbjct: 501 RSTLARQLQ 509
>Os02g0822000 Conserved hypothetical protein
Length = 428
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 87/175 (49%), Gaps = 19/175 (10%)
Query: 59 PQQDRQSRWAGCFSALSCFGSQKGGKR-----IVPAARIPDGNASTSRGNAHQSGSNSNQ 113
PQ + + +WA S CFGSQK G+R +VP P +A H
Sbjct: 33 PQAEPRRKWADWLSVYFCFGSQKNGRRISHAVLVPEPLPPRTDAPMPEIPIHPPPPVFPF 92
Query: 114 NVXXXXXXXXXXXXXXXXXXXXXXXTAQSP-----NRFLSISANSPGGPTSNMFAVGPYA 168
QSP LS ++ SP GP S +FA+GPYA
Sbjct: 93 V--------APPSSPASFLQSGGASIVQSPVGAPSFSPLSPNSPSPTGPPS-IFAIGPYA 143
Query: 169 NEPQLVSPPVFSTYTTEPSTAPLTPPPELTHATTPSSPDVPYARFLFSAMDLKTA 223
+E QLVSPPVFS +TTEPSTAP TPPPE H TTPSSP+VPYA+ L S + K A
Sbjct: 144 HETQLVSPPVFSAFTTEPSTAPFTPPPESVHLTTPSSPEVPYAKLLTSINNSKNA 198
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.127 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,339,051
Number of extensions: 776210
Number of successful extensions: 2768
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2755
Number of HSP's successfully gapped: 3
Length of query: 540
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 434
Effective length of database: 11,501,117
Effective search space: 4991484778
Effective search space used: 4991484778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 158 (65.5 bits)