BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0267600 Os03g0267600|AK072790
(899 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0267600 Hypothetical protein 1778 0.0
Os03g0139200 Cytochrome c region domain containing protein 89 1e-17
>Os03g0267600 Hypothetical protein
Length = 899
Score = 1778 bits (4606), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 862/899 (95%), Positives = 862/899 (95%)
Query: 1 MPTKGQFSRERNVKATLGRDGRQRGNSQDQSVQVPKEKIAVVGGNIDGKFEDRIRVVKNE 60
MPTKGQFSRERNVKATLGRDGRQRGNSQDQSVQVPKEKIAVVGGNIDGKFEDRIRVVKNE
Sbjct: 1 MPTKGQFSRERNVKATLGRDGRQRGNSQDQSVQVPKEKIAVVGGNIDGKFEDRIRVVKNE 60
Query: 61 KFRRQREPRSADAGGSLKGSKPWPGRKATTVDELVKHMSNVPSYLQRKETSGHLQDKALN 120
KFRRQREPRSADAGGSLKGSKPWPGRKATTVDELVKHMSNVPSYLQRKETSGHLQDKALN
Sbjct: 61 KFRRQREPRSADAGGSLKGSKPWPGRKATTVDELVKHMSNVPSYLQRKETSGHLQDKALN 120
Query: 121 VGVLEWGLLARWSHQQKHEFSSSHGASPSNTXXXXXXXXXXXXXXXXXXXXXXXNQSPTL 180
VGVLEWGLLARWSHQQKHEFSSSHGASPSNT NQSPTL
Sbjct: 121 VGVLEWGLLARWSHQQKHEFSSSHGASPSNTSRSLIFSSPSQSSASPSSKSLESNQSPTL 180
Query: 181 NDHQHCSMEFQQSDLEDKYHGKARYSPSPNSAVLNLLPVHGKHFPENTGKYGDLNLRNIS 240
NDHQHCSMEFQQSDLEDKYHGKARYSPSPNSAVLNLLPVHGKHFPENTGKYGDLNLRNIS
Sbjct: 181 NDHQHCSMEFQQSDLEDKYHGKARYSPSPNSAVLNLLPVHGKHFPENTGKYGDLNLRNIS 240
Query: 241 PLSDPLLTATGSSMRHEMVDDEETTRNIEEAVHHCSRRLFTDDDNIGQSFFTSHNNDSAC 300
PLSDPLLTATGSSMRHEMVDDEETTRNIEEAVHHCSRRLFTDDDNIGQSFFTSHNNDSAC
Sbjct: 241 PLSDPLLTATGSSMRHEMVDDEETTRNIEEAVHHCSRRLFTDDDNIGQSFFTSHNNDSAC 300
Query: 301 GDFQQSSGVTGEVFETLVSSAVMEMERNASLSPVGFSKDIGQHHEFPRIPYSCPLPIMDS 360
GDFQQSSGVTGEVFETLVSSAVMEMERNASLSPVGFSKDIGQHHEFPRIPYSCPLPIMDS
Sbjct: 301 GDFQQSSGVTGEVFETLVSSAVMEMERNASLSPVGFSKDIGQHHEFPRIPYSCPLPIMDS 360
Query: 361 SEELGTSRTGTQGDSVGAAVTIGENRNQKQISRGASERTPRISAKFSDMDASPHRHLVSG 420
SEELGTSRTGTQGDSVGAAVTIGENRNQKQISRGASERTPRISAKFSDMDASPHRHLVSG
Sbjct: 361 SEELGTSRTGTQGDSVGAAVTIGENRNQKQISRGASERTPRISAKFSDMDASPHRHLVSG 420
Query: 421 LNRVNRCSSLKDGPCPRQPEASTSVDKINGDKSSGNKGSRRSPLRRMLDPILKPRQSSTS 480
LNRVNRCSSLKDGPCPRQPEASTSVDKINGDKSSGNKGSRRSPLRRMLDPILKPRQSSTS
Sbjct: 421 LNRVNRCSSLKDGPCPRQPEASTSVDKINGDKSSGNKGSRRSPLRRMLDPILKPRQSSTS 480
Query: 481 GPIQPSFVPKCHLPGHIDKQSLSLGGSALQNVQRRSVDSVVNSNCRTETNTNQPPQVLNS 540
GPIQPSFVPKCHLPGHIDKQSLSLGGSALQNVQRRSVDSVVNSNCRTETNTNQPPQVLNS
Sbjct: 481 GPIQPSFVPKCHLPGHIDKQSLSLGGSALQNVQRRSVDSVVNSNCRTETNTNQPPQVLNS 540
Query: 541 ERYLQQDIDSTTTRHALLQLAWKNGLPFFMLSCGSDILVATVRRKGISDNNDLESTYTLF 600
ERYLQQDIDSTTTRHALLQLAWKNGLPFFMLSCGSDILVATVRRKGISDNNDLESTYTLF
Sbjct: 541 ERYLQQDIDSTTTRHALLQLAWKNGLPFFMLSCGSDILVATVRRKGISDNNDLESTYTLF 600
Query: 601 GVEEPKKRGGAWIKAGNKNKKDQLVYNIVGEMRVSHRKSRCYQAEKNHLHREFVLVGSEQ 660
GVEEPKKRGGAWIKAGNKNKKDQLVYNIVGEMRVSHRKSRCYQAEKNHLHREFVLVGSEQ
Sbjct: 601 GVEEPKKRGGAWIKAGNKNKKDQLVYNIVGEMRVSHRKSRCYQAEKNHLHREFVLVGSEQ 660
Query: 661 LPSSEESGDSHVSREFAAFISAVSQQEPETXXXXXXXXXXXXXXTPTDCSCPLGNFHPNT 720
LPSSEESGDSHVSREFAAFISAVSQQEPET TPTDCSCPLGNFHPNT
Sbjct: 661 LPSSEESGDSHVSREFAAFISAVSQQEPETSRHSSSQHSSRSMSTPTDCSCPLGNFHPNT 720
Query: 721 RDDSCASSSVLAVLPNGFHGTSTSGQPLPLIERWKSGGACDCGGWDEGCMLSVLSDDARE 780
RDDSCASSSVLAVLPNGFHGTSTSGQPLPLIERWKSGGACDCGGWDEGCMLSVLSDDARE
Sbjct: 721 RDDSCASSSVLAVLPNGFHGTSTSGQPLPLIERWKSGGACDCGGWDEGCMLSVLSDDARE 780
Query: 781 NKGDKSTQANQTTDGSQRFDLFVQGRSREDKHAFSMVSFREGLYTVEFRSSIALLQAFAM 840
NKGDKSTQANQTTDGSQRFDLFVQGRSREDKHAFSMVSFREGLYTVEFRSSIALLQAFAM
Sbjct: 781 NKGDKSTQANQTTDGSQRFDLFVQGRSREDKHAFSMVSFREGLYTVEFRSSIALLQAFAM 840
Query: 841 CIVMLHGRRPTRTQAGVHASQEHASLADHKLNKIMAASQGRAQASYVPHRPPLSPVGRA 899
CIVMLHGRRPTRTQAGVHASQEHASLADHKLNKIMAASQGRAQASYVPHRPPLSPVGRA
Sbjct: 841 CIVMLHGRRPTRTQAGVHASQEHASLADHKLNKIMAASQGRAQASYVPHRPPLSPVGRA 899
>Os03g0139200 Cytochrome c region domain containing protein
Length = 582
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 76/145 (52%), Gaps = 14/145 (9%)
Query: 714 GNFHPNTRDDSCA------SSSVLAVLPNGFHG--TSTSGQPLPLIERWKSGGACDCGGW 765
G HP + +D + SV A+ P G+HG S +G P LI RW+SGG CDCGGW
Sbjct: 438 GATHPGSTEDGDVQNKKNNAGSVSAIFPRGYHGGAASKNGSPASLIGRWRSGGRCDCGGW 497
Query: 766 DEGCMLSVLSDDARENKGDKSTQANQTTDGSQRFDLFVQGRSREDKHAFSMVSFREGLYT 825
D GC + VL +D S QA + + +L V+G + F +V+ + L+
Sbjct: 498 DIGCPIRVLQNDG----CGTSPQAESQSQDRKSVELSVKGAKKGP--MFRLVNITDDLHI 551
Query: 826 VEFRSSIALLQAFAMCIVMLHGRRP 850
+ F SS++ LQ F+ I ++H + P
Sbjct: 552 IYFDSSLSPLQCFSAGIAIIHSQAP 576
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.129 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 31,939,893
Number of extensions: 1386482
Number of successful extensions: 2830
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2826
Number of HSP's successfully gapped: 3
Length of query: 899
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 789
Effective length of database: 11,292,261
Effective search space: 8909593929
Effective search space used: 8909593929
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 161 (66.6 bits)