BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0265400 Os03g0265400|AK120527
(323 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0265400 Similar to 50S ribosomal protein L4, chloropla... 424 e-119
Os11g0585700 Similar to 50S ribosomal protein L4 92 4e-19
>Os03g0265400 Similar to 50S ribosomal protein L4, chloroplast precursor
(R-protein L4)
Length = 323
Score = 424 bits (1089), Expect = e-119, Method: Compositional matrix adjust.
Identities = 213/232 (91%), Positives = 213/232 (91%)
Query: 48 GKQKAAISVLRALRAEAATLPVLSFTGEKVGEVALDLKSAPPSTARAVVHRAIITDRQNK 107
GKQKAAISVLRALRAEAATLPVLSFTGEKVGEVALDLKSAPPSTARAVVHRAIITDRQNK
Sbjct: 48 GKQKAAISVLRALRAEAATLPVLSFTGEKVGEVALDLKSAPPSTARAVVHRAIITDRQNK 107
Query: 108 RRGTASTLTRGEVRGGGRKPYQQKKTGKARRGSMRTPLRPGGGVIFGPKPRDWSIKINRK 167
RRGTASTLTRGEVRGGGRKPYQQKKTGKARRGSMRTPLRPGGGVIFGPKPRDWSIKINRK
Sbjct: 108 RRGTASTLTRGEVRGGGRKPYQQKKTGKARRGSMRTPLRPGGGVIFGPKPRDWSIKINRK 167
Query: 168 EKRLAISTALASXXXXXXXXXXXXXXXXXXXGPKTRDFVAALQRWGLDPKEKAMFFATDF 227
EKRLAISTALAS GPKTRDFVAALQRWGLDPKEKAMFFATDF
Sbjct: 168 EKRLAISTALASAAVADDAFVVEEFDEEFAAGPKTRDFVAALQRWGLDPKEKAMFFATDF 227
Query: 228 ADNVRLSGRNIGSLKMLTPRTLNLYDILDARKLFFTPAAINYLNSRYGATVF 279
ADNVRLSGRNIGSLKMLTPRTLNLYDILDARKLFFTPAAINYLNSRYGATVF
Sbjct: 228 ADNVRLSGRNIGSLKMLTPRTLNLYDILDARKLFFTPAAINYLNSRYGATVF 279
>Os11g0585700 Similar to 50S ribosomal protein L4
Length = 286
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 100/206 (48%), Gaps = 6/206 (2%)
Query: 69 VLSFTGEKVGEVALDLKSAPPSTARAVVHRAIITDRQNKRRGTASTLTRGEVRGGGRKPY 128
V +F E G + LD + +VHR + +++GT ST T EV G GRKPY
Sbjct: 79 VTNFHNEDKGFMVLDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPY 138
Query: 129 QQKKTGKARRGSMRTPLRPGGGVIFGPKPRDWSIKINRKEKRLAISTALASXXXXXXXXX 188
QK TG+AR G++R P GG + GPKPR +IK+ +K +RL + AL++
Sbjct: 139 NQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLV 198
Query: 189 XXXXXXXXXXGPKTRDFVAALQRWGLDPKEKAMFF-ATDFADNVRLSGRNIGSLKMLTPR 247
KT++ V + + ++ +K + D ++L+ +N+ + +L
Sbjct: 199 FDDLEVPSH---KTKNIVQYIGQ--MEGTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSI 253
Query: 248 TLNLYDILDARKLFFTPAAINYLNSR 273
LN+Y IL L T AIN + R
Sbjct: 254 GLNVYSILQHDTLVMTRNAINRIVER 279
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.133 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,312,288
Number of extensions: 296254
Number of successful extensions: 867
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 865
Number of HSP's successfully gapped: 2
Length of query: 323
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 222
Effective length of database: 11,762,187
Effective search space: 2611205514
Effective search space used: 2611205514
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)