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Os11g0585700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 50S ribosomal protein L4.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.1 (0.0225) R2 : 0.422
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.02 (0.059) R2dC : 0.378 R2C : 0.354
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.307 (0.0473) R2dN8 : 0.0687 R2N8 : 0.0446
σ : 0.424
deviance : 82.28
__
_____
C
peak time of C : 17.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
61.91 0.37 11 0.62 1.64 0.899 0.791 0.595 0.428 15.2 0.03578 101 -- --
62.78 0.369 11 0.626 1.63 0.888 0.169 -- 0.425 15.2 0.05996 104 -- --
62.82 0.369 11 0.655 1.68 0.928 -- 0.176 0.452 15.2 0.05999 104 -- --
62.78 0.369 11 0.648 1.62 0.868 -- -- 0.435 15.3 0.04611 113 -- --
123.78 0.521 11.1 0.532 -- -0.306 -- -0.0355 0.348 -- 46.44 8597 -- --
73.62 0.402 11.1 0.571 1.02 -- 0.218 -- 0.369 17.8 -- -- -- --
73.73 0.402 11.1 0.57 1.02 -- -- -- 0.37 17.8 -- -- -- --
123.43 0.52 11.1 0.535 -- -0.329 -- -- 0.348 -- 50.21 47520 -- --
74.09 0.401 11.1 -- 1.63 0.89 -- -- 0.405 15.3 0.06 108 -- --
128.2 0.529 11.1 0.538 -- -- -- -- 0.346 -- -- -- -- --
82.28 0.424 11.1 -- 1.02 -- -- -- 0.307 17.8 -- -- -- --
130.98 0.535 11.1 -- -- -0.332 -- -- 0.289 -- 50.21 47520 -- --
135.82 0.544 11.1 -- -- -- -- -- 0.286 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 51.67 wind 5.0 270 < th dose independent rect. 3 4
2 51.77 precipitation 0.1 270 < th dose independent rect. 3 4
3 51.77 precipitation 0.1 270 < th dose dependent rect. 3 4
4 52.23 radiation 1.0 30 > th dose independent rect. 18 15
5 52.27 wind 9.0 270 < th dose independent rect. 7 20
6 52.28 radiation 1.0 30 > th dose independent rect. 5 4
22 52.67 humidity 70.0 270 > th dose independent rect. 3 4
23 52.67 radiation 20.0 270 < th dose independent rect. 3 4
25 52.69 temperature 10.0 270 > th dose independent rect. 3 4
27 52.69 temperature 30.0 270 < th dose independent rect. 3 4
28 52.69 humidity 50.0 270 > th dose independent rect. 3 4
30 52.69 atmosphere 995.0 270 > th dose independent rect. 3 4
31 52.69 atmosphere 1015.0 270 < th dose independent rect. 3 4
34 52.69 temperature 10.0 270 > th dose independent rect. 7 20
35 52.73 radiation 40.0 270 < th dose dependent rect. 3 4
37 52.89 temperature 10.0 270 > th dose dependent rect. 3 4
39 52.91 precipitation 0.1 270 < th dose independent rect. 3 14
40 52.91 precipitation 0.1 270 < th dose dependent rect. 3 14
43 52.93 wind 9.0 270 < th dose dependent rect. 3 4
62 53.52 radiation 1.0 90 < th dose dependent sin 12 NA
65 53.60 radiation 20.0 270 < th dose independent rect. 2 6
82 53.78 temperature 10.0 10 > th dose dependent rect. 5 4
95 53.82 radiation 1.0 90 > th dose independent sin 12 NA
98 53.84 radiation 1.0 90 < th dose independent sin 12 NA
101 53.90 wind 9.0 270 < th dose independent rect. 17 10
103 53.94 radiation 1.0 30 > th dose independent rect. 14 19
104 53.99 precipitation 0.1 270 < th dose independent rect. 7 20
105 53.99 precipitation 0.1 270 < th dose dependent rect. 7 20
107 54.01 radiation 10.0 270 < th dose independent rect. 17 10
109 54.02 radiation 40.0 270 < th dose dependent rect. 17 10
117 54.11 temperature 10.0 270 > th dose independent rect. 17 10
121 54.11 temperature 10.0 270 > th dose independent rect. 3 14
122 54.11 atmosphere 1015.0 270 < th dose independent rect. 3 14
140 54.24 atmosphere 995.0 270 > th dose independent rect. 17 10
143 54.32 atmosphere 995.0 270 > th dose independent rect. 7 20
145 54.36 precipitation 0.1 10 < th dose independent rect. 14 19
146 54.36 precipitation 0.1 10 < th dose dependent rect. 14 19
149 54.38 radiation 1.0 30 > th dose independent rect. 16 17
152 54.40 radiation 40.0 270 < th dose dependent rect. 2 6
155 54.46 humidity 50.0 270 > th dose dependent rect. 3 4
157 54.47 humidity 50.0 270 > th dose independent rect. 17 10
168 54.60 wind 5.0 10 < th dose independent rect. 5 4
172 54.64 precipitation 0.1 10 < th dose independent rect. 5 4
174 54.64 wind 9.0 10 < th dose dependent rect. 5 4
175 54.64 precipitation 0.1 10 < th dose dependent rect. 5 4
179 54.66 wind 9.0 10 < th dose independent rect. 9 20
193 54.77 wind 9.0 270 < th dose dependent rect. 7 20
196 54.79 temperature 10.0 10 > th dose independent rect. 5 4
198 54.79 temperature 30.0 10 < th dose independent rect. 5 4
199 54.79 humidity 50.0 10 > th dose independent rect. 5 4
201 54.79 atmosphere 995.0 10 > th dose independent rect. 5 4
202 54.79 atmosphere 1015.0 10 < th dose independent rect. 5 4
203 54.79 temperature 10.0 10 > th dose independent rect. 9 20
215 54.90 humidity 50.0 270 > th dose dependent rect. 18 9
216 54.91 radiation 1.0 10 > th dose independent rect. 9 5
232 54.98 temperature 10.0 10 > th dose independent rect. 9 5
234 54.98 atmosphere 995.0 10 > th dose independent rect. 9 5
235 54.98 atmosphere 1015.0 10 < th dose independent rect. 9 5
236 54.98 precipitation 0.1 10 < th dose independent rect. 9 5
238 54.98 temperature 10.0 10 > th dose independent rect. 14 19
240 54.98 precipitation 0.1 10 < th dose dependent rect. 9 5
254 55.02 precipitation 0.1 270 < th dose independent rect. 13 18
257 55.02 precipitation 0.1 270 < th dose dependent rect. 13 18
259 55.03 atmosphere 1000.0 10 > th dose dependent rect. 5 4
275 55.06 wind 9.0 270 < th dose independent rect. 3 14
278 55.07 wind 9.0 10 < th dose independent rect. 9 5
279 55.08 temperature 10.0 1440 > th dose independent rect. 10 5
282 55.08 temperature 10.0 1440 > th dose independent rect. 15 19
325 55.18 radiation 40.0 10 < th dose independent rect. 5 4
337 55.20 radiation 40.0 30 < th dose independent rect. 14 19
341 55.23 wind 9.0 30 < th dose independent rect. 14 19
364 55.33 atmosphere 995.0 270 > th dose dependent rect. 3 4
369 55.34 atmosphere 995.0 10 > th dose independent rect. 9 20
376 55.37 precipitation 0.1 270 < th dose independent rect. 17 10
379 55.37 precipitation 0.1 270 < th dose dependent rect. 17 10
415 55.55 temperature 10.0 10 > th dose dependent rect. 9 5
432 55.61 wind 9.0 270 < th dose independent rect. 7 6
442 55.69 wind 1.0 30 > th dose independent rect. 9 5
447 55.72 precipitation 0.1 270 < th dose independent rect. 7 6
448 55.72 precipitation 0.1 270 < th dose dependent rect. 7 6
449 55.72 wind 9.0 90 < th dose dependent rect. 9 19
450 55.73 temperature 10.0 270 > th dose independent rect. 7 6
451 55.73 atmosphere 995.0 270 > th dose independent rect. 7 6
452 55.73 atmosphere 1015.0 270 < th dose independent rect. 7 6
454 55.73 temperature 10.0 270 > th dose independent rect. 13 18
465 55.75 wind 1.0 270 > th dose independent rect. 3 4
470 55.76 wind 9.0 270 < th dose dependent rect. 7 6
488 55.88 atmosphere 995.0 10 > th dose independent rect. 14 19
526 56.04 radiation 1.0 270 > th dose independent rect. 7 6
532 56.07 atmosphere 1015.0 270 < th dose independent rect. 7 20
547 56.11 wind 9.0 270 < th dose independent rect. 13 18
548 56.12 wind 9.0 270 < th dose independent rect. 9 1
549 56.12 precipitation 0.1 270 < th dose independent rect. 9 1
551 56.12 temperature 30.0 270 < th dose independent rect. 18 9
553 56.12 precipitation 0.1 270 < th dose dependent rect. 9 1
557 56.14 temperature 10.0 270 > th dose independent rect. 9 1
558 56.14 humidity 50.0 270 > th dose independent rect. 9 1
559 56.14 atmosphere 995.0 270 > th dose independent rect. 9 1
560 56.14 atmosphere 1015.0 270 < th dose independent rect. 9 1
563 56.14 temperature 10.0 270 > th dose independent rect. 10 23
566 56.15 humidity 50.0 270 > th dose independent rect. 7 20
583 56.19 humidity 50.0 270 > th dose independent rect. 7 6
585 56.19 precipitation 0.1 10 < th dose independent rect. 9 20
588 56.19 precipitation 0.1 10 < th dose dependent rect. 9 20
605 56.26 precipitation 0.1 270 < th dose independent rect. 10 23
607 56.26 precipitation 0.1 270 < th dose dependent rect. 10 23
638 56.31 atmosphere 1005.0 270 > th dose independent rect. 3 4
639 56.31 humidity 50.0 10 > th dose independent rect. 14 19
642 56.32 radiation 1.0 270 > th dose independent rect. 9 1
749 56.47 wind 9.0 270 < th dose dependent rect. 9 1
763 56.52 humidity 90.0 10 < th dose independent rect. 5 4
764 56.52 atmosphere 1015.0 10 < th dose independent rect. 9 20
776 56.55 atmosphere 1005.0 10 > th dose independent rect. 5 4
811 56.61 atmosphere 995.0 270 > th dose independent rect. 3 14
831 56.66 wind 1.0 270 > th dose independent rect. 13 18
849 56.72 temperature 10.0 10 > th dose dependent rect. 9 20
850 56.73 humidity 90.0 10 < th dose independent rect. 9 5
925 56.91 radiation 40.0 10 < th dose independent rect. 5 15
960 57.00 temperature 10.0 270 > th dose dependent rect. 9 1
967 57.03 humidity 50.0 30 > th dose independent rect. 9 5
975 57.04 wind 1.0 270 > th dose independent rect. 9 1
990 57.05 atmosphere 1005.0 270 > th dose independent rect. 4 2
997 57.06 humidity 90.0 30 < th dose independent rect. 2 7