BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0260100 Os03g0260100|AK066143
(173 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0260100 Conserved hypothetical protein 262 9e-71
Os01g0894000 Metallophosphoesterase domain containing protein 124 3e-29
Os07g0274100 Metallophosphoesterase domain containing protein 122 9e-29
>Os03g0260100 Conserved hypothetical protein
Length = 173
Score = 262 bits (670), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 133/148 (89%), Positives = 133/148 (89%)
Query: 26 VVADDGASVARSAFSMDGDVAWVVQVSDLHISAYHPDRADDLASILGPALRAIRPHLLLV 85
VVADDGASVARSAFSMDGDVAWVVQVSDLHISAYHPDRADDLASILGPALRAIRPHLLLV
Sbjct: 26 VVADDGASVARSAFSMDGDVAWVVQVSDLHISAYHPDRADDLASILGPALRAIRPHLLLV 85
Query: 86 TGDITDAKNRRKTTSRQDEREWITYXXXXXXXXXXXXXXXSRIFDIRGNHDTYGVPYRGG 145
TGDITDAKNRRKTTSRQDEREWITY SRIFDIRGNHDTYGVPYRGG
Sbjct: 86 TGDITDAKNRRKTTSRQDEREWITYKKAIDAIVGIGGIDKSRIFDIRGNHDTYGVPYRGG 145
Query: 146 KLDFFSTYSVNSQLDRLSTISSILLQVL 173
KLDFFSTYSVNSQLDRLSTISSILLQVL
Sbjct: 146 KLDFFSTYSVNSQLDRLSTISSILLQVL 173
>Os01g0894000 Metallophosphoesterase domain containing protein
Length = 733
Score = 124 bits (311), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 79/127 (62%)
Query: 45 VAWVVQVSDLHISAYHPDRADDLASILGPALRAIRPHLLLVTGDITDAKNRRKTTSRQDE 104
V WVVQ+SDLH S +HPDRA D +GPAL + P L+L+TGD+TD K++ T +Q+E
Sbjct: 40 VVWVVQLSDLHFSVHHPDRAYDFRRYVGPALAMVNPALVLITGDLTDGKSKDLLTMKQNE 99
Query: 105 REWITYXXXXXXXXXXXXXXXSRIFDIRGNHDTYGVPYRGGKLDFFSTYSVNSQLDRLST 164
EWI Y S +D+RGNHD++GVP GG DF+ YS+N+ L R S
Sbjct: 100 MEWIEYRSKLKDVIESSKLPRSIFYDLRGNHDSFGVPSPGGDHDFYQKYSINAILRRHSR 159
Query: 165 ISSILLQ 171
+ SI L+
Sbjct: 160 VQSITLE 166
>Os07g0274100 Metallophosphoesterase domain containing protein
Length = 737
Score = 122 bits (307), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 85/139 (61%), Gaps = 3/139 (2%)
Query: 36 RSAFSMDGD---VAWVVQVSDLHISAYHPDRADDLASILGPALRAIRPHLLLVTGDITDA 92
R ++G+ V W VQ+SDLH+SA+HP+RA D +G AL + P L+L+TGD+TDA
Sbjct: 38 RRVVEVEGEPRSVVWAVQLSDLHLSAFHPERAADFRRHVGGALAMVNPSLVLITGDLTDA 97
Query: 93 KNRRKTTSRQDEREWITYXXXXXXXXXXXXXXXSRIFDIRGNHDTYGVPYRGGKLDFFST 152
K++ +SRQ++ EW+ Y +D+RGNHD+YGVP GG DF+
Sbjct: 98 KSKDLLSSRQEKSEWLEYEELIDEVVGLSGLNKEIFYDLRGNHDSYGVPEVGGMFDFYEK 157
Query: 153 YSVNSQLDRLSTISSILLQ 171
+S+N++L R + SI LQ
Sbjct: 158 HSINARLGRTGNVQSITLQ 176
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,454,539
Number of extensions: 146604
Number of successful extensions: 328
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 3
Length of query: 173
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 79
Effective length of database: 12,127,685
Effective search space: 958087115
Effective search space used: 958087115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)