Os03g0260100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0260100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.96 | 0.301 | 8.76 | -0.463 | 0.532 | -0.892 | -0.447 | 0.138 | -0.0527 | 5.3 | 31.11 | 12 | -- | -- |
| 40.98 | 0.298 | 8.76 | -0.441 | 0.533 | -0.888 | -0.419 | -- | -0.0461 | 5.31 | 31.05 | 12 | -- | -- |
| 41.43 | 0.3 | 8.76 | -0.459 | 0.528 | -0.909 | -- | 0.0243 | -0.0464 | 5.27 | 31.42 | 13 | -- | -- |
| 41.4 | 0.3 | 8.76 | -0.441 | 0.534 | -0.912 | -- | -- | -0.0424 | 5.31 | 31.47 | 12 | -- | -- |
| 53.81 | 0.344 | 8.76 | -0.362 | -- | -0.559 | -- | 0.0873 | 0.0243 | -- | 31.42 | 13 | -- | -- |
| 51.37 | 0.336 | 8.72 | -0.231 | 0.39 | -- | -0.346 | -- | 0.112 | 7.29 | -- | -- | -- | -- |
| 51.66 | 0.337 | 8.72 | -0.237 | 0.388 | -- | -- | -- | 0.114 | 7.53 | -- | -- | -- | -- |
| 50.8 | 0.333 | 8.76 | -0.389 | -- | -0.815 | -- | -- | 0.018 | -- | 22.89 | 3 | -- | -- |
| 46.04 | 0.316 | 8.74 | -- | 0.487 | -0.822 | -- | -- | 0.0418 | 5.73 | 45.74 | 10 | -- | -- |
| 59.73 | 0.361 | 8.73 | -0.231 | -- | -- | -- | -- | 0.12 | -- | -- | -- | -- | -- |
| 53.14 | 0.341 | 8.72 | -- | 0.386 | -- | -- | -- | 0.14 | 7.58 | -- | -- | -- | -- |
| 54.41 | 0.345 | 8.74 | -- | -- | -0.716 | -- | -- | 0.0798 | -- | 22.4 | 2 | -- | -- |
| 61.14 | 0.365 | 8.73 | -- | -- | -- | -- | -- | 0.145 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.91 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 2 | 40.97 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 3 | 40.99 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 4 | 40.99 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 5 | 41.01 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 10 | 41.12 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 15 | 41.23 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 16 | 41.25 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 21 | 41.36 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 22 | 41.36 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 24 | 41.40 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 25 | 41.41 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 26 | 41.44 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 28 | 41.47 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 30 | 41.50 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 35 | 41.55 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 40 | 41.64 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 58 | 41.78 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 61 | 41.80 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 68 | 41.89 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 69 | 41.91 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 82 | 42.02 | temperature | 15 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 89 | 42.10 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 99 | 42.22 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 107 | 42.28 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 110 | 42.30 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 370 | 43.01 | temperature | 10 | 90 | > th | dose dependent | sin | 7 | NA |
| 438 | 43.13 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 18 |
| 468 | 43.16 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 544 | 43.24 | temperature | 30 | 90 | < th | dose dependent | sin | 7 | NA |
| 699 | 43.40 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 706 | 43.41 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 16 |
| 767 | 43.47 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 784 | 43.50 | temperature | 20 | 90 | > th | dose independent | rect. | 6 | 23 |
| 801 | 43.50 | temperature | 15 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 932 | 43.66 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 16 |
| 975 | 43.72 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 20 |
| 994 | 43.74 | temperature | 20 | 270 | < th | dose independent | rect. | 6 | 22 |
| 996 | 43.74 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 3 |