BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0260100 Os03g0260100|AK066143
         (173 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G03305.1  | chr3:775504-778271 REVERSE LENGTH=744              125   1e-29

>AT3G03305.1 | chr3:775504-778271 REVERSE LENGTH=744
          Length = 743

 Score =  125 bits (313), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 56/128 (43%), Positives = 81/128 (63%)

Query: 44  DVAWVVQVSDLHISAYHPDRADDLASILGPALRAIRPHLLLVTGDITDAKNRRKTTSRQD 103
           D+ WVVQ+SDLH S +HP+RA D  +I+GPAL  I P L+L+TGD+TD K++   T + +
Sbjct: 57  DLIWVVQLSDLHFSVHHPERAIDFKNIVGPALALINPSLVLITGDLTDGKSKDMLTMKLN 116

Query: 104 EREWITYXXXXXXXXXXXXXXXSRIFDIRGNHDTYGVPYRGGKLDFFSTYSVNSQLDRLS 163
           E EW+ Y               S  +D+RGNHD +GVP  G  +DFFS YS+N Q+ R  
Sbjct: 117 EDEWLEYESVMQDVVKRSGLNKSIFYDLRGNHDNFGVPSVGSSVDFFSKYSINGQMGRKG 176

Query: 164 TISSILLQ 171
            +++I ++
Sbjct: 177 NVNTITVE 184



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,712,366
Number of extensions: 83554
Number of successful extensions: 165
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 81
Effective length of database: 8,584,297
Effective search space: 695328057
Effective search space used: 695328057
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)