BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0255500 Os03g0255500|AK102392
(663 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0255500 Similar to Phosphoenolpyruvate carboxykinase 4... 1253 0.0
Os10g0204400 Similar to Phosphoenolpyruvate carboxykinase (... 1002 0.0
AK109774 554 e-158
>Os03g0255500 Similar to Phosphoenolpyruvate carboxykinase 4 (EC 4.1.1.49)
(Fragment)
Length = 663
Score = 1253 bits (3241), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 606/663 (91%), Positives = 606/663 (91%)
Query: 1 MASTPNGLARIETHGAKTKKHENGICHDDSSAPVRAQTIDELHSLQRKRSAPTTPIKDGA 60
MASTPNGLARIETHGAKTKKHENGICHDDSSAPVRAQTIDELHSLQRKRSAPTTPIKDGA
Sbjct: 1 MASTPNGLARIETHGAKTKKHENGICHDDSSAPVRAQTIDELHSLQRKRSAPTTPIKDGA 60
Query: 61 SSPFXXXXXXXXXXXXXXXXXXXXXXXXTRETGPKVVRGDPARKGEAAAKGAXXXXXXXX 120
SSPF TRETGPKVVRGDPARKGEAAAKGA
Sbjct: 61 SSPFAAALSEEERQRQQLQSISASLASLTRETGPKVVRGDPARKGEAAAKGAPSPHPQPV 120
Query: 121 XXXXXXXXXXIAVSDSSLKFTHVLYNLSPAELYEQAIKYEKGSFITSTGALATLSGAKTG 180
IAVSDSSLKFTHVLYNLSPAELYEQAIKYEKGSFITSTGALATLSGAKTG
Sbjct: 121 HHHHPHVTPTIAVSDSSLKFTHVLYNLSPAELYEQAIKYEKGSFITSTGALATLSGAKTG 180
Query: 181 RSPRDKRIVKDEASAQELWWGKGSPNIEMDEHTFLTNRERAVDYLNSLDKVFVNDQFLNW 240
RSPRDKRIVKDEASAQELWWGKGSPNIEMDEHTFLTNRERAVDYLNSLDKVFVNDQFLNW
Sbjct: 181 RSPRDKRIVKDEASAQELWWGKGSPNIEMDEHTFLTNRERAVDYLNSLDKVFVNDQFLNW 240
Query: 241 DTENRIKVRIISARAYHSLFMHNMCIRPTEEELEEFGTPDFTIYNAGQFPCNRYTHYMTS 300
DTENRIKVRIISARAYHSLFMHNMCIRPTEEELEEFGTPDFTIYNAGQFPCNRYTHYMTS
Sbjct: 241 DTENRIKVRIISARAYHSLFMHNMCIRPTEEELEEFGTPDFTIYNAGQFPCNRYTHYMTS 300
Query: 301 STSVDINLARREMVILGTQYAGEMKKGLFGVMHYLMPRRGILSLHSGCNMGKQGDVAXXX 360
STSVDINLARREMVILGTQYAGEMKKGLFGVMHYLMPRRGILSLHSGCNMGKQGDVA
Sbjct: 301 STSVDINLARREMVILGTQYAGEMKKGLFGVMHYLMPRRGILSLHSGCNMGKQGDVALFF 360
Query: 361 XXXXXXXXXXXXDHNRLLIGDDEHCWSDTGVSNIEGGCYAKCIDLSQEKEPDIWNAIKFG 420
DHNRLLIGDDEHCWSDTGVSNIEGGCYAKCIDLSQEKEPDIWNAIKFG
Sbjct: 361 GLSGTGKTTLSTDHNRLLIGDDEHCWSDTGVSNIEGGCYAKCIDLSQEKEPDIWNAIKFG 420
Query: 421 TVLENVVFDEHTREVDYTDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGV 480
TVLENVVFDEHTREVDYTDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGV
Sbjct: 421 TVLENVVFDEHTREVDYTDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGV 480
Query: 481 LPPVSKLNLPQTMYHFISGYTALVAGTEDGIKEPQATFSACFGAAFIMLHPTKYAAMLAE 540
LPPVSKLNLPQTMYHFISGYTALVAGTEDGIKEPQATFSACFGAAFIMLHPTKYAAMLAE
Sbjct: 481 LPPVSKLNLPQTMYHFISGYTALVAGTEDGIKEPQATFSACFGAAFIMLHPTKYAAMLAE 540
Query: 541 KMQKYGATGWLVNTGWSGGRYGVGKRIRLPYTRKIIDAIHSGELLTANYKKTEVFGLEIP 600
KMQKYGATGWLVNTGWSGGRYGVGKRIRLPYTRKIIDAIHSGELLTANYKKTEVFGLEIP
Sbjct: 541 KMQKYGATGWLVNTGWSGGRYGVGKRIRLPYTRKIIDAIHSGELLTANYKKTEVFGLEIP 600
Query: 601 TEIDGIPSEILDPINTWTDKGAYKETLLKLAGLFKKNFEVFANYKIGGDSSLTDKILAAG 660
TEIDGIPSEILDPINTWTDKGAYKETLLKLAGLFKKNFEVFANYKIGGDSSLTDKILAAG
Sbjct: 601 TEIDGIPSEILDPINTWTDKGAYKETLLKLAGLFKKNFEVFANYKIGGDSSLTDKILAAG 660
Query: 661 PNF 663
PNF
Sbjct: 661 PNF 663
>Os10g0204400 Similar to Phosphoenolpyruvate carboxykinase (Fragment)
Length = 637
Score = 1002 bits (2591), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/663 (73%), Positives = 534/663 (80%), Gaps = 26/663 (3%)
Query: 1 MASTPNGLARIETHGAKTKKHENGICHDDSSAPVRAQTIDELHSLQRKRSAPTTPIKDGA 60
M +G A + T+G +++ E+G+CHDDS+ PVRA T+DELHSLQRK ++D
Sbjct: 1 MMEAKDGQAWLGTNGYGSRREEDGVCHDDSATPVRANTVDELHSLQRKPQV----VED-- 54
Query: 61 SSPFXXXXXXXXXXXXXXXXXXXXXXXXTRETGPKVVRGDPARKGEAAAKGAXXXXXXXX 120
T GPK+V GDPARK E A K
Sbjct: 55 ------------RHRLQLQSISASLASMTCGIGPKLVNGDPARKKEMAGKAVTHHQHHIT 102
Query: 121 XXXXXXXXXXIAVSDSSLKFTHVLYNLSPAELYEQAIKYEKGSFITSTGALATLSGAKTG 180
I VSDS LKFTHVLYNLSP+ELYE AIKYEKGSFITS+GALATLSGAKTG
Sbjct: 103 VPT-------ITVSDSDLKFTHVLYNLSPSELYEHAIKYEKGSFITSSGALATLSGAKTG 155
Query: 181 RSPRDKRIVKDEASAQELWWGKGSPNIEMDEHTFLTNRERAVDYLNSLDKVFVNDQFLNW 240
RSPRDKR+VKDE + +LWWGKGSPNIEMDE TFL NRERAVDYLNSLDKVFVNDQFLNW
Sbjct: 156 RSPRDKRVVKDETT-DDLWWGKGSPNIEMDEQTFLINRERAVDYLNSLDKVFVNDQFLNW 214
Query: 241 DTENRIKVRIISARAYHSLFMHNMCIRPTEEELEEFGTPDFTIYNAGQFPCNRYTHYMTS 300
D NRIKVRIISARAYHSLFMHNMCIRPT EELE FG PDFTIYNAGQFPCNRYTHYMTS
Sbjct: 215 DPNNRIKVRIISARAYHSLFMHNMCIRPTYEELENFGEPDFTIYNAGQFPCNRYTHYMTS 274
Query: 301 STSVDINLARREMVILGTQYAGEMKKGLFGVMHYLMPRRGILSLHSGCNMGKQGDVAXXX 360
STS+D+NL RREMVILGTQYAGEMKKGLF VMHYLMP++ ILSLHSGCNMG+ GDVA
Sbjct: 275 STSIDLNLKRREMVILGTQYAGEMKKGLFSVMHYLMPKKQILSLHSGCNMGRGGDVALFF 334
Query: 361 XXXXXXXXXXXXDHNRLLIGDDEHCWSDTGVSNIEGGCYAKCIDLSQEKEPDIWNAIKFG 420
D NR+LIGDDEHCWSD G+SNIEGGCYAKCIDLSQEKEPDIW+AIKFG
Sbjct: 335 GLSGTGKTTLSTDRNRILIGDDEHCWSDNGISNIEGGCYAKCIDLSQEKEPDIWDAIKFG 394
Query: 421 TVLENVVFDEHTREVDYTDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGV 480
TVLENVVFDEH+REVDYT+KSVTENTRAAYPIEYI NAKIPCVGPHPKNVILLACDAFGV
Sbjct: 395 TVLENVVFDEHSREVDYTEKSVTENTRAAYPIEYIANAKIPCVGPHPKNVILLACDAFGV 454
Query: 481 LPPVSKLNLPQTMYHFISGYTALVAGTEDGIKEPQATFSACFGAAFIMLHPTKYAAMLAE 540
LPPVSKL+ QTMYHFISGYTALVAGTEDGIKEPQATFSACFGAAFIMLHPT+YAAMLA+
Sbjct: 455 LPPVSKLSHAQTMYHFISGYTALVAGTEDGIKEPQATFSACFGAAFIMLHPTRYAAMLAD 514
Query: 541 KMQKYGATGWLVNTGWSGGRYGVGKRIRLPYTRKIIDAIHSGELLTANYKKTEVFGLEIP 600
KM K+GATGWLVNTGW GG YGVG+RI L YTRKIIDAIHSGELL +YKKT+VFGL+IP
Sbjct: 515 KMNKHGATGWLVNTGWIGGSYGVGERISLAYTRKIIDAIHSGELLARSYKKTDVFGLDIP 574
Query: 601 TEIDGIPSEILDPINTWTDKGAYKETLLKLAGLFKKNFEVFANYKIGGDSSLTDKILAAG 660
T+++G+PSE+LDPINTW DK +YK TLLKL+ LFK+NF+VFANYK GG S L D+I AAG
Sbjct: 575 TKVEGVPSELLDPINTWEDKDSYKLTLLKLSDLFKRNFKVFANYKKGGVSDLADEIAAAG 634
Query: 661 PNF 663
PNF
Sbjct: 635 PNF 637
>AK109774
Length = 469
Score = 554 bits (1428), Expect = e-158, Method: Compositional matrix adjust.
Identities = 271/477 (56%), Positives = 341/477 (71%), Gaps = 13/477 (2%)
Query: 188 IVKDEASAQELWWGKGSPNIEMDEHTFLTNRERAVDYLNSLDKVFVNDQFLNWDTENRIK 247
IV++E+S +++WWG N M + + NRERAVDYLN+ ++++V D F WD RI+
Sbjct: 1 IVQEESSEKDVWWG--PVNKPMTQDVWRINRERAVDYLNTRNRIYVVDGFAGWDERYRIR 58
Query: 248 VRIISARAYHSLFMHNMCIRPTEEELEEFGTPDFTIYNAGQFPCNRYTHYMTSSTSVDIN 307
VR++ ARAYH+LFM NM IRP+ EELE F PD+ IYNAG FP NR+T MTS+TSV IN
Sbjct: 59 VRVVCARAYHALFMRNMLIRPSREELEHFH-PDYVIYNAGSFPANRFTEGMTSATSVAIN 117
Query: 308 LARREMVILGTQYAGEMKKGLFGVMHYLMP-RRGILSLHSGCNMGKQGDVAXXXXXXXXX 366
A +EMVILGT+YAGEMKKG+F V++Y MP + +L+LHS N G+ GDV
Sbjct: 118 FAEKEMVILGTEYAGEMKKGVFTVLYYEMPVKHNVLTLHSSANEGENGDVTVFFGLSGTG 177
Query: 367 XXXXXXDHNRLLIGDDEHCWSDTGVSNIEGGCYAKCIDLSQEKEPDIWNAIKFGTVLENV 426
D R LIGDDEHCW+DTGV NIEGGCYAKCI LS EKEPDI+NAI+FG+VLENV
Sbjct: 178 KTTLSADPKRKLIGDDEHCWTDTGVFNIEGGCYAKCIGLSAEKEPDIFNAIRFGSVLENV 237
Query: 427 VFDEHTREVDYTDKSVTENTRAAYPIEYIPNAKIPCVGP-HPKNVILLACDAFGVLPPVS 485
VFD +R VDY D ++TENTR AYPIEYI NAKIPC HP N+ILL CDA GVLPP+S
Sbjct: 238 VFDPVSRVVDYDDSTLTENTRCAYPIEYIDNAKIPCKSENHPTNIILLTCDARGVLPPIS 297
Query: 486 KLNLPQTMYHFISGYTALVAGTEDGIKEPQATFSACFGAAFIMLHPTKYAAMLAEKMQKY 545
KL QTM+HFISGYT+ +AGTEDG+ EPQATFS+CF F+ LHP +YA MLAEK++++
Sbjct: 298 KLTPEQTMFHFISGYTSKMAGTEDGVTEPQATFSSCFAQPFLALHPMRYAHMLAEKIKEH 357
Query: 546 GATGWLVNTGWSG-GRYGVGKRIRLPYTRKIIDAIHSGELLTANYKKTEVFGLEIPTEID 604
A WL+NTGW G G GKR L YTR I+DAIH+G L ANY+ E F L +PT
Sbjct: 358 KANAWLLNTGWVGAGATTGGKRCPLKYTRAILDAIHNGSLANANYEVYETFNLPVPTACP 417
Query: 605 GIPSEILDPINTWTDKGAYKETLLKLAGLFKKNFEVFANYKIGGDSSLTDKILAAGP 661
G+P E+L+P N+WT ++K+ + KLA LF +NF+ +++ T ++LAA P
Sbjct: 418 GVPDELLNPKNSWTASTSFKDEVTKLATLFNENFKKYSD-------EATPEVLAAAP 467
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,339,193
Number of extensions: 860141
Number of successful extensions: 1779
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1770
Number of HSP's successfully gapped: 3
Length of query: 663
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 556
Effective length of database: 11,448,903
Effective search space: 6365590068
Effective search space used: 6365590068
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)