BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0254200 Os03g0254200|Os03g0254200
         (544 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0254200  Aromatic amino acid permease family protein         902   0.0  
Os07g0662800  Aromatic amino acid permease family protein         104   2e-22

>Os03g0254200 Aromatic amino acid permease family protein
          Length = 544

 Score =  902 bits (2331), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/544 (84%), Positives = 462/544 (84%)

Query: 1   MQGAITRARLQHRPARFHRAPYRCIPVTTTTCLPERRVHRGGGVQWCGSSAATXXXXXXX 60
           MQGAITRARLQHRPARFHRAPYRCIPVTTTTCLPERRVHRGGGVQWCGSSAAT       
Sbjct: 1   MQGAITRARLQHRPARFHRAPYRCIPVTTTTCLPERRVHRGGGVQWCGSSAATGERARAV 60

Query: 61  XXXXXXXXXXXXXXXXXQXXXXXXXXXXXXPSSGGGAKRXXXXXXXXXXXXTSIGSGILA 120
                            Q            PSSGGGAKR            TSIGSGILA
Sbjct: 61  SEVRAAGARGGDARPPPQGEGDVAAGVAEAPSSGGGAKRGSVVGAAALVVGTSIGSGILA 120

Query: 121 VPQRTAPAGFVPSAACMVTCWAFLVIEALLLVEINVHLRRXXXXXXXXXXXXXXXXQLEV 180
           VPQRTAPAGFVPSAACMVTCWAFLVIEALLLVEINVHLRR                QLEV
Sbjct: 121 VPQRTAPAGFVPSAACMVTCWAFLVIEALLLVEINVHLRRKKGKDAGGDGDGGGGGQLEV 180

Query: 181 ISLKSMAQETLGEWGGNLAAAAYLFLSYTSMVAYTSKSGEVLSSVVAGVPEPVSGCXXXX 240
           ISLKSMAQETLGEWGGNLAAAAYLFLSYTSMVAYTSKSGEVLSSVVAGVPEPVSGC    
Sbjct: 181 ISLKSMAQETLGEWGGNLAAAAYLFLSYTSMVAYTSKSGEVLSSVVAGVPEPVSGCAFTA 240

Query: 241 XXXXXXXXXXXXXXDKVNQLLTFVMIGLLLTIEVSAVAFGAGLTLPANTNWEQVPATLPV 300
                         DKVNQLLTFVMIGLLLTIEVSAVAFGAGLTLPANTNWEQVPATLPV
Sbjct: 241 ALALLIAAGGTGVTDKVNQLLTFVMIGLLLTIEVSAVAFGAGLTLPANTNWEQVPATLPV 300

Query: 301 IIFTLVFHDIAPVICAYLGGDLVRIRLSILVGSIVPLLSLLVWDDIALSISTDLDGFDIL 360
           IIFTLVFHDIAPVICAYLGGDLVRIRLSILVGSIVPLLSLLVWDDIALSISTDLDGFDIL
Sbjct: 301 IIFTLVFHDIAPVICAYLGGDLVRIRLSILVGSIVPLLSLLVWDDIALSISTDLDGFDIL 360

Query: 361 DMLNTEWSYTVVETFSLLAVGTSLIGTLLGASQFFIEQMTNLVSSSAQGHEEEALRHRGA 420
           DMLNTEWSYTVVETFSLLAVGTSLIGTLLGASQFFIEQMTNLVSSSAQGHEEEALRHRGA
Sbjct: 361 DMLNTEWSYTVVETFSLLAVGTSLIGTLLGASQFFIEQMTNLVSSSAQGHEEEALRHRGA 420

Query: 421 KTAVDNNRLSYIAAGAVVAPTVLIAATVPNSFSIATDIAGGYCMTILYGVLPPLMAWAIA 480
           KTAVDNNRLSYIAAGAVVAPTVLIAATVPNSFSIATDIAGGYCMTILYGVLPPLMAWAIA
Sbjct: 421 KTAVDNNRLSYIAAGAVVAPTVLIAATVPNSFSIATDIAGGYCMTILYGVLPPLMAWAIA 480

Query: 481 SRMSDSRAGSVEAESSVAGGSGNVDLTSAKPVLVGMGVFSVLMVFEQMSQDFVSFQSYLL 540
           SRMSDSRAGSVEAESSVAGGSGNVDLTSAKPVLVGMGVFSVLMVFEQMSQDFVSFQSYLL
Sbjct: 481 SRMSDSRAGSVEAESSVAGGSGNVDLTSAKPVLVGMGVFSVLMVFEQMSQDFVSFQSYLL 540

Query: 541 AWTG 544
           AWTG
Sbjct: 541 AWTG 544



>Os07g0662800 Aromatic amino acid permease family protein
          Length = 316

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 111/220 (50%), Gaps = 8/220 (3%)

Query: 181 ISLKSMAQETLGEWGGNLAAAAYLFLSYTSMVAYTSKSGEVLSSVVAGVPEPVSGCXXXX 240
           +SL SMA  TLG +G   A  +YLF+ Y  +VAY ++S E++++ V G+P   S      
Sbjct: 9   VSLVSMAMRTLGTFGVRTACISYLFIHYALLVAYVARSSEIITNSV-GIPLWESAALFSL 67

Query: 241 XXXXXXXXXXXXXXDKVNQLLTFVMIGLLLTIEVSAVAFGAGLTLPANTNWEQVPATLPV 300
                           VN  L F ++    T+ V A       +L    N+   P ++P+
Sbjct: 68  AFGGLCYFGSQRVIGAVNGFLVFSILASFTTLVVVASGNLQWSSL-LEANFAAAPQSIPI 126

Query: 301 IIFTLVFHDIAPVICAYLGGDLVRIRLSILVGSIVPLLSLLVWDDIALSISTDLDG---- 356
           I  + V+ ++ PV+C  L GDL ++R +I+VG+ +PL   L+WD + L     L G    
Sbjct: 127 IALSFVYQNVVPVLCTNLEGDLSKVRKAIVVGTAIPLALFLIWDAVILGTLPGLAGDGTI 186

Query: 357 FDILDMLNTEWSYT--VVETFSLLAVGTSLIGTLLGASQF 394
            D L+ L +       +VE FS LA+GTS IG +LG S F
Sbjct: 187 IDPLEQLRSSNGTVGPIVEAFSFLAIGTSYIGFVLGLSDF 226



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,595,318
Number of extensions: 584120
Number of successful extensions: 1460
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1456
Number of HSP's successfully gapped: 2
Length of query: 544
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 438
Effective length of database: 11,501,117
Effective search space: 5037489246
Effective search space used: 5037489246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)