Os07g0662800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Aromatic amino acid permease family protein.
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Os07g0662800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Aromatic amino acid permease family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.05 | 0.339 | 11.8 | -1.63 | 0.782 | -0.396 | -0.403 | 1.1 | -0.668 | 1.33 | 90.52 | 42 | -- | -- |
| 53.13 | 0.339 | 11.8 | -1.57 | 0.852 | -0.368 | 0.113 | -- | -0.663 | 1.54 | 85.89 | 43 | -- | -- |
| 51.69 | 0.335 | 11.8 | -1.64 | 0.733 | -0.492 | -- | 1.76 | -0.631 | 1.48 | 93.86 | 144 | -- | -- |
| 53.17 | 0.34 | 11.8 | -1.57 | 0.845 | -0.356 | -- | -- | -0.66 | 1.5 | 85.89 | 43 | -- | -- |
| 81.25 | 0.42 | 11.8 | -1.67 | -- | -0.21 | -- | 1.98 | -0.609 | -- | 93.88 | 350 | -- | -- |
| 56.9 | 0.354 | 11.8 | -1.62 | 0.666 | -- | -0.144 | -- | -0.589 | 0.897 | -- | -- | -- | -- |
| 56.98 | 0.353 | 11.8 | -1.62 | 0.667 | -- | -- | -- | -0.589 | 0.937 | -- | -- | -- | -- |
| 71.37 | 0.393 | 11.8 | -1.54 | -- | -0.778 | -- | -- | -0.651 | -- | 80.12 | 955 | -- | -- |
| 117.67 | 0.505 | 11.8 | -- | 0.922 | -0.519 | -- | -- | -0.53 | 1.6 | 85.9 | 38 | -- | -- |
| 84.69 | 0.43 | 11.8 | -1.59 | -- | -- | -- | -- | -0.576 | -- | -- | -- | -- | -- |
| 126.08 | 0.525 | 11.7 | -- | 0.641 | -- | -- | -- | -0.408 | 0.829 | -- | -- | -- | -- |
| 131.21 | 0.534 | 11.8 | -- | -- | -0.985 | -- | -- | -0.55 | -- | 84 | 980 | -- | -- |
| 151.74 | 0.575 | 11.7 | -- | -- | -- | -- | -- | -0.399 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.27 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 14 |
| 3 | 50.36 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 12 | 18 |
| 4 | 50.46 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 21 | 8 |
| 5 | 50.55 | humidity | 90.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 8 | 50.61 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 11 |
| 9 | 50.61 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 22 | 7 |
| 12 | 50.68 | humidity | 90.0 | 270 | < th | dose independent | rect. | 15 | 10 |
| 14 | 50.68 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 1 | 5 |
| 17 | 50.72 | humidity | 80.0 | 30 | > th | dose dependent | sin | 7 | NA |
| 18 | 50.73 | humidity | 90.0 | 90 | > th | dose independent | rect. | 23 | 8 |
| 31 | 50.83 | humidity | 70.0 | 30 | > th | dose independent | rect. | 16 | 9 |
| 36 | 50.85 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 23 | 9 |
| 43 | 50.90 | humidity | 50.0 | 30 | > th | dose dependent | sin | 8 | NA |
| 47 | 50.92 | temperature | 25.0 | 270 | < th | dose independent | rect. | 21 | 8 |
| 57 | 50.95 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 1 | 7 |
| 68 | 51.00 | temperature | 30.0 | 10 | < th | dose independent | rect. | 6 | 19 |
| 84 | 51.06 | humidity | 90.0 | 270 | > th | dose independent | rect. | 21 | 8 |
| 92 | 51.09 | humidity | 90.0 | 270 | > th | dose dependent | sin | 13 | NA |
| 99 | 51.11 | humidity | 50.0 | 270 | > th | dose independent | rect. | 13 | 23 |
| 142 | 51.21 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 12 | 17 |
| 144 | 51.22 | humidity | 90.0 | 90 | < th | dose independent | rect. | 17 | 19 |
| 149 | 51.22 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 14 | 15 |
| 168 | 51.26 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 7 |
| 184 | 51.27 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 1 | 1 |
| 200 | 51.30 | temperature | 30.0 | 270 | < th | dose independent | rect. | 5 | 16 |
| 203 | 51.30 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 3 | 14 |
| 205 | 51.31 | temperature | 30.0 | 90 | < th | dose independent | rect. | 17 | 19 |
| 243 | 51.39 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 24 | 14 |
| 257 | 51.42 | wind | 1.0 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 273 | 51.44 | radiation | 10.0 | 90 | < th | dose dependent | sin | 6 | NA |
| 280 | 51.45 | temperature | 30.0 | 270 | < th | dose independent | rect. | 5 | 14 |
| 336 | 51.53 | radiation | 20.0 | 10 | < th | dose dependent | sin | 7 | NA |
| 343 | 51.54 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 5 | 6 |
| 387 | 51.60 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 1 | 13 |
| 389 | 51.61 | temperature | 30.0 | 270 | < th | dose independent | rect. | 15 | 19 |
| 397 | 51.61 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 22 | 16 |
| 405 | 51.62 | temperature | 30.0 | 90 | < th | dose independent | rect. | 17 | 8 |
| 406 | 51.62 | humidity | 90.0 | 720 | < th | dose independent | rect. | 20 | 8 |
| 419 | 51.63 | humidity | 90.0 | 270 | < th | dose independent | sin | 14 | NA |
| 423 | 51.63 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 16 | 9 |
| 427 | 51.64 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 1 | 16 |
| 428 | 51.64 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 23 |
| 453 | 51.66 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 1 | 3 |
| 461 | 51.67 | humidity | 90.0 | 90 | > th | dose independent | sin | 9 | NA |
| 462 | 51.67 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 1 | 3 |
| 464 | 51.67 | temperature | 30.0 | 270 | < th | dose independent | rect. | 15 | 8 |
| 471 | 51.68 | humidity | 90.0 | 720 | < th | dose independent | rect. | 20 | 10 |
| 516 | 51.72 | radiation | 10.0 | 30 | < th | dose independent | rect. | 16 | 9 |
| 575 | 51.77 | humidity | 90.0 | 270 | > th | dose independent | sin | 11 | NA |
| 579 | 51.77 | humidity | 90.0 | 30 | < th | dose independent | rect. | 20 | 16 |
| 681 | 51.84 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 19 |
| 696 | 51.85 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 15 | 7 |
| 697 | 51.85 | wind | 1.0 | 90 | > th | dose independent | rect. | 17 | 8 |
| 760 | 51.88 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 1 | 14 |
| 762 | 51.88 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 1 | 16 |
| 769 | 51.89 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 2 |
| 770 | 51.89 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 12 | 6 |
| 778 | 51.90 | radiation | 1.0 | 90 | < th | dose independent | sin | 5 | NA |
| 797 | 51.91 | humidity | 90.0 | 90 | < th | dose independent | sin | 11 | NA |
| 840 | 51.93 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 18 | 8 |
| 843 | 51.93 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 18 | 8 |
| 845 | 51.93 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 18 | 8 |
| 859 | 51.93 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 2 | 16 |
| 862 | 51.93 | temperature | 30.0 | 270 | < th | dose independent | rect. | 14 | 22 |
| 913 | 51.96 | humidity | 90.0 | 30 | < th | dose independent | rect. | 23 | 13 |
| 930 | 51.97 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 8 |
| 941 | 51.98 | wind | 9.0 | 90 | < th | dose independent | rect. | 17 | 8 |
| 961 | 51.99 | wind | 1.0 | 270 | > th | dose independent | rect. | 15 | 10 |
| 967 | 51.99 | humidity | 90.0 | 720 | < th | dose independent | rect. | 11 | 19 |
| 978 | 52.00 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 16 |
| 983 | 52.00 | temperature | 30.0 | 10 | < th | dose independent | rect. | 6 | 21 |
| 993 | 52.01 | temperature | 20.0 | 10 | > th | dose independent | rect. | 1 | 5 |
| 1000 | 52.01 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 23 | 16 |