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Os03g0254200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Aromatic amino acid permease family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.0659) R2 : 0.827
β1 : 0.409 (0.225) R2dD : 0.00224 R2D : -0.103
β2 : 5.01 (0.122) R2dC : 0.654 R2C : 0.602
β3 : -32.5 (2.62) R2dE : 2.75 R2E : -2
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -66.5 (5.84) R2dD*E : 2.23 R2D*E : -2.77
γ1 : 0.326 (0.103) R2dN8 : 0.00538 R2N8 : -0.0975
σ : 0.886
deviance : 361.62
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C
peak time of C : 7.69
E
wheather : radiation
threshold : 1.279
memory length : 1120
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.89
open length of G : 3.62

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
356.95 0.888 11.3 0.359 5.01 -32.8 1.32 -66.9 0.325 7.71 1.279 1120 8.93 3.55
502.23 1.05 11.8 2.32 5.13 -1.4 0.525 -- 0.519 7.73 1.279 1120 8.93 3.55
361.62 0.886 11.3 0.409 5.01 -32.5 -- -66.5 0.326 7.69 1.279 1120 8.89 3.62
395.03 0.926 11.9 1.76 5.18 -2.86 -- -- 0.323 7.69 2.003 1240 11.8 2.35
1686.93 1.91 11.5 0.582 -- -32.3 -- -65.8 0.341 -- 1.68 906 8.89 4.15
504.16 1.05 11.8 2.34 5.13 -- 0.553 -- 0.525 7.72 -- -- -- --
505.02 1.05 11.8 2.35 5.13 -- -- -- 0.524 7.72 -- -- -- --
484.05 1.02 12 1.78 -- -6.41 -- -- 0.175 -- 127.5 575 10.4 8.55
463.1 1 11.8 -- 4.86 -3.45 -- -- 0.208 7.56 1.873 1955 11.6 2.55
1922.73 2.05 11.9 2.42 -- -- -- -- 0.598 -- -- -- -- --
650.9 1.19 11.8 -- 5.14 -- -- -- 0.262 7.68 -- -- -- --
604.77 1.15 12 -- -- -6.09 -- -- 0.204 -- 145.9 566 10.6 8.47
2077.03 2.13 11.9 -- -- -- -- -- 0.33 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 372.75 radiation 1 1440 < th dose independent rect. 9 3
2 372.75 radiation 1 1440 < th dose dependent rect. 9 3
5 373.89 radiation 10 1440 < th dose independent rect. 24 5
6 374.21 radiation 1 1440 < th dose independent rect. 11 1
7 374.21 radiation 1 1440 < th dose dependent rect. 11 1
17 378.16 radiation 1 1440 > th dose independent rect. 11 3
18 378.20 radiation 1 1440 > th dose independent rect. 13 1
19 378.70 radiation 1 1440 > th dose independent rect. 11 1
22 379.01 radiation 1 1440 > th dose independent rect. 9 5
23 379.48 radiation 10 1440 < th dose independent rect. 21 8
36 381.00 radiation 1 1440 < th dose independent rect. 13 1
37 381.00 radiation 1 1440 < th dose dependent rect. 13 1
57 383.26 radiation 20 1440 < th dose dependent rect. 24 5
86 389.11 radiation 10 1440 < th dose independent rect. 3 2
87 389.13 radiation 10 1440 < th dose dependent rect. 21 8
100 390.80 radiation 1 1440 > th dose independent rect. 4 1
110 390.80 radiation 1 1440 > th dose dependent rect. 4 1
137 393.32 radiation 1 1440 > th dose independent rect. 9 1
155 397.66 humidity 90 720 > th dose independent rect. 11 2
160 398.25 humidity 90 720 > th dose dependent rect. 11 2
174 400.23 radiation 1 90 < th dose dependent sin 22 NA
175 401.26 radiation 10 1440 < th dose dependent rect. 3 2
176 401.45 radiation 1 90 < th dose independent sin 22 NA
179 402.22 radiation 1 90 < th dose dependent rect. 7 12
225 408.61 radiation 1 90 > th dose independent sin 21 NA
236 409.67 humidity 80 14400 < th dose independent rect. 22 2
238 409.76 radiation 1 90 < th dose independent rect. 7 12
240 409.94 humidity 80 14400 < th dose dependent rect. 22 1
265 412.32 humidity 80 14400 > th dose independent rect. 21 11
271 412.68 humidity 80 14400 > th dose independent rect. 22 5
289 413.25 humidity 80 14400 > th dose independent rect. 23 1
291 413.30 humidity 80 14400 < th dose dependent rect. 21 3
301 413.83 radiation 1 1440 < th dose dependent rect. 11 13
305 413.91 radiation 1 1440 < th dose dependent rect. 11 10
323 414.25 humidity 60 14400 > th dose independent rect. 1 7
334 414.70 temperature 25 90 > th dose independent rect. 10 8
336 414.76 humidity 60 14400 > th dose independent rect. 3 5
347 415.08 humidity 60 14400 < th dose independent rect. 6 1
349 415.08 humidity 60 14400 < th dose independent rect. 20 1
351 415.08 radiation 20 14400 > th dose independent rect. 17 1
402 415.08 humidity 60 14400 < th dose dependent rect. 6 1
404 415.08 humidity 60 14400 < th dose dependent rect. 20 1
406 415.08 radiation 20 14400 > th dose dependent rect. 17 1
458 415.14 humidity 80 1440 < th dose independent rect. 11 3
470 415.65 humidity 80 14400 < th dose independent rect. 21 11
507 416.38 radiation 1 1440 < th dose independent rect. 11 13
520 416.45 radiation 1 1440 < th dose independent rect. 11 10
548 417.05 radiation 1 90 > th dose independent rect. 11 8
565 417.39 humidity 90 14400 < th dose dependent rect. 2 5
576 418.02 wind 7 14400 > th dose dependent rect. 13 3
647 418.78 humidity 80 14400 < th dose dependent rect. 20 11
690 420.30 temperature 25 90 < th dose independent rect. 5 14
695 420.52 temperature 25 90 < th dose independent rect. 5 16
698 420.58 wind 7 14400 > th dose independent rect. 13 1
734 420.85 radiation 1 720 < th dose dependent rect. 22 19
740 420.93 humidity 60 14400 > th dose independent rect. 7 1
741 420.93 humidity 80 1440 < th dose independent rect. 8 6
745 421.11 radiation 1 1440 < th dose dependent sin 20 NA
837 422.44 wind 7 14400 < th dose independent rect. 13 1
847 422.81 temperature 20 270 > th dose independent rect. 15 8
884 423.66 humidity 60 14400 > th dose independent rect. 21 11
894 423.99 radiation 1 1440 < th dose independent sin 20 NA
900 424.08 radiation 1 1440 > th dose independent sin 19 NA
903 424.10 atmosphere 1015 4320 > th dose dependent rect. 6 1
974 425.25 atmosphere 1015 4320 > th dose dependent rect. 3 6
979 425.39 temperature 25 30 < th dose independent sin 22 NA