BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0253600 Os03g0253600|AK119506
         (335 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0253600  Conserved hypothetical protein                      512   e-145
Os10g0200700  Conserved hypothetical protein                      369   e-102

>Os03g0253600 Conserved hypothetical protein
          Length = 335

 Score =  512 bits (1319), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 265/335 (79%), Positives = 265/335 (79%)

Query: 1   MSSYDQMLAPLLGAGRSAWTAHDXXXXXXEAVVRQILKCTRWQLEETTDFVTCPYHYYCD 60
           MSSYDQMLAPLLGAGRSAWTAHD      EAVVRQILKCTRWQLEETTDFVTCPYHYYCD
Sbjct: 1   MSSYDQMLAPLLGAGRSAWTAHDGGGGGGEAVVRQILKCTRWQLEETTDFVTCPYHYYCD 60

Query: 61  SSYPGDYHXXXXXXXXXXXXYCFLSTLAFTVLDLAXXXXXXXXXXXXXXXXXKYXXXXXX 120
           SSYPGDYH            YCFLSTLAFTVLDLA                 KY      
Sbjct: 61  SSYPGDYHAAVGVLVAAFAAYCFLSTLAFTVLDLARSGGGGGGAGGVRGIRRKYLLPSGP 120

Query: 121 XXXXXXXXXXAKGQRINAVFXXXXXXXXXXXXXXXXXXXFRNEADGDIRYAVLEASTVSG 180
                     AKGQRINAVF                   FRNEADGDIRYAVLEASTVSG
Sbjct: 121 FLLPLVLLVLAKGQRINAVFPLAQLGPALLLLLQASALAFRNEADGDIRYAVLEASTVSG 180

Query: 181 VLHASLYLDAVVLPYYTGLEALRWSQFSGECATCLCRMEPLVVGGTAVRYRGLSKTALAI 240
           VLHASLYLDAVVLPYYTGLEALRWSQFSGECATCLCRMEPLVVGGTAVRYRGLSKTALAI
Sbjct: 181 VLHASLYLDAVVLPYYTGLEALRWSQFSGECATCLCRMEPLVVGGTAVRYRGLSKTALAI 240

Query: 241 IFALCSRMVCRIYGEERLSAWTRSALEAAGWVFVAADAVYLVGWVAIEGGAVAVLAYSLV 300
           IFALCSRMVCRIYGEERLSAWTRSALEAAGWVFVAADAVYLVGWVAIEGGAVAVLAYSLV
Sbjct: 241 IFALCSRMVCRIYGEERLSAWTRSALEAAGWVFVAADAVYLVGWVAIEGGAVAVLAYSLV 300

Query: 301 AGLVFLSVFGKVYRFLAWLETRQSQWKSSLCHSAV 335
           AGLVFLSVFGKVYRFLAWLETRQSQWKSSLCHSAV
Sbjct: 301 AGLVFLSVFGKVYRFLAWLETRQSQWKSSLCHSAV 335



>Os10g0200700 Conserved hypothetical protein
          Length = 316

 Score =  369 bits (948), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/305 (65%), Positives = 216/305 (70%), Gaps = 7/305 (2%)

Query: 32  VVRQILKCTRWQLEETTDFVTCPYHYYCDSSYPGDYHXXXXXXXXXXXXYCFLSTLAFTV 91
           + RQILKCTRWQLEETTDF+TCPYHYYCDS+YPGDY             YC +S  AF V
Sbjct: 17  ITRQILKCTRWQLEETTDFITCPYHYYCDSAYPGDYSPAVGALVAAFAAYCLVSAAAFAV 76

Query: 92  LDLAXXXXXXXXXXXXXXXXXKYXXXXXXXXXXXXXXXXAKGQRINAVFXXXXXXXXXXX 151
           LD+                  KY                AKGQRINAVF           
Sbjct: 77  LDIGRAGGGGGRNRR------KYMVPSGPFLLPVVLLALAKGQRINAVFPLAQLGPALLL 130

Query: 152 XXXXXXXXFRNEADGDIRYAVLEASTVSGVLHASLYLDAVVLPYYTGLEALRWSQFSGEC 211
                   FRNEADGD+RYAVLEASTVSG+LHASLYLDAVVLPYYTG +ALRWS+FSGEC
Sbjct: 131 TLQASALAFRNEADGDLRYAVLEASTVSGILHASLYLDAVVLPYYTGTDALRWSRFSGEC 190

Query: 212 ATCLCRMEPLVVGGTAVRYRGLSKTALAIIFALCSRMVCRIYGEERLSAWTRSALEAAGW 271
           ATCLCRM+PLVVGG  V YRGLSKTALAIIFALCSRMVCRIYGEER+SAWTRSALEAA W
Sbjct: 191 ATCLCRMDPLVVGGRTVLYRGLSKTALAIIFALCSRMVCRIYGEERVSAWTRSALEAASW 250

Query: 272 VFVAADAVYLVGWVAIEGGAVAVLAYSLVAGLVFLSVFGKVYRFLAWLETRQSQWKSSL- 330
           VFVA DAVYL GW   EG A +V AY+LVAGLVFL +FGKVY+FLAW+ETRQ QWK S+ 
Sbjct: 251 VFVAGDAVYLAGWAFAEGAAASVAAYALVAGLVFLCIFGKVYKFLAWMETRQVQWKPSVS 310

Query: 331 CHSAV 335
           CHS V
Sbjct: 311 CHSNV 315



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.136    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,871,795
Number of extensions: 296622
Number of successful extensions: 818
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 814
Number of HSP's successfully gapped: 2
Length of query: 335
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 234
Effective length of database: 11,762,187
Effective search space: 2752351758
Effective search space used: 2752351758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 156 (64.7 bits)