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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0200700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.03 (0.0413) R2 : 0.089
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.42 (0.225) R2dE : 0.0797 R2E : 0.0808
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.156 (0.0872) R2dN8 : 0.00828 R2N8 : 0.00938
σ : 0.777
deviance : 277.97
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 82.7
memory length : 39
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 16.9
open length of G : 1.03

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
266.65 0.767 3.03 -0.333 0.254 1.56 0.23 -2.98 -0.181 8.41 83.04 37 16.9 1.05
271.56 0.768 3.03 -0.307 0.257 1.56 0.579 -- -0.187 7.94 80.23 37 16.9 1.05
266.64 0.761 3.03 -0.335 0.255 1.7 -- -3.45 -0.192 8.46 81.86 37 16.9 1.01
272.46 0.769 3.03 -0.286 0.252 1.51 -- -- -0.185 8.34 81.34 40 16.8 1.08
269.91 0.765 3.04 -0.329 -- 1.62 -- -3.66 -0.183 -- 82.82 37 16.9 0.959
298.37 0.81 3.05 -0.273 0.167 -- -0.0638 -- -0.219 13.8 -- -- -- --
298.38 0.809 3.05 -0.276 0.166 -- -- -- -0.22 13.5 -- -- -- --
275.78 0.773 3.04 -0.288 -- 1.46 -- -- -0.187 -- 81.18 38 16.9 0.986
274.68 0.772 3.03 -- 0.254 1.48 -- -- -0.158 8.48 80.77 40 16.8 1.09
300.07 0.809 3.05 -0.282 -- -- -- -- -0.223 -- -- -- -- --
300.38 0.811 3.04 -- 0.171 -- -- -- -0.189 13.6 -- -- -- --
277.97 0.777 3.03 -- -- 1.42 -- -- -0.156 -- 82.7 39 16.9 1.03
302.17 0.811 3.04 -- -- -- -- -- -0.192 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 268.03 humidity 80.0 30 < th dose independent rect. 17 1
3 270.22 radiation 1.0 30 > th dose independent rect. 17 1
28 272.20 temperature 20.0 30 > th dose dependent rect. 17 1
29 272.43 humidity 90.0 90 < th dose dependent rect. 16 2
42 275.03 temperature 20.0 30 > th dose independent rect. 17 1
61 276.26 wind 1.0 90 > th dose dependent rect. 16 2
63 276.59 wind 3.0 90 > th dose independent rect. 16 2
66 277.45 radiation 10.0 10 < th dose independent rect. 17 1
79 278.36 atmosphere 995.0 90 > th dose independent rect. 16 2
81 278.46 precipitation 0.1 90 < th dose independent rect. 16 2
82 278.46 precipitation 0.1 90 < th dose dependent rect. 16 2
97 279.03 radiation 30.0 90 < th dose independent rect. 16 2
99 279.05 temperature 10.0 90 > th dose independent rect. 16 2
101 279.05 atmosphere 1010.0 90 < th dose independent rect. 16 2
104 279.05 temperature 10.0 90 > th dose independent rect. 18 22
110 279.39 humidity 50.0 10 > th dose independent rect. 17 1
111 279.39 atmosphere 1015.0 90 < th dose dependent rect. 16 2
112 279.41 precipitation 0.1 90 < th dose independent rect. 18 22
113 279.41 precipitation 0.1 90 < th dose dependent rect. 18 22
116 279.61 wind 9.0 90 < th dose independent rect. 18 22
121 279.76 atmosphere 995.0 90 > th dose independent rect. 18 22
151 280.23 temperature 10.0 1440 > th dose independent rect. 17 2
155 280.23 radiation 30.0 1440 < th dose independent rect. 17 2
161 280.23 temperature 10.0 1440 > th dose independent rect. 19 22
164 280.25 humidity 50.0 90 > th dose independent rect. 18 22
168 280.31 wind 9.0 30 < th dose independent rect. 17 1
173 280.45 radiation 30.0 30 < th dose dependent rect. 16 2
187 280.68 temperature 25.0 10 > th dose dependent rect. 16 18
202 280.99 wind 9.0 90 > th dose dependent rect. 16 3
210 281.07 temperature 25.0 90 > th dose dependent rect. 16 18
242 281.39 radiation 1.0 90 < th dose independent rect. 5 22
243 281.39 atmosphere 995.0 30 > th dose dependent rect. 17 1
245 281.41 wind 9.0 90 > th dose independent rect. 16 3
270 281.50 radiation 10.0 90 < th dose dependent rect. 10 1
287 281.71 humidity 80.0 270 < th dose independent rect. 13 5
292 281.74 radiation 1.0 30 > th dose dependent rect. 17 1
293 281.74 radiation 1.0 90 < th dose dependent rect. 5 22
324 282.05 wind 9.0 90 > th dose independent rect. 13 6
368 282.46 radiation 10.0 90 < th dose independent rect. 10 1
391 282.56 wind 9.0 90 < th dose independent sin 13 NA
394 282.56 wind 1.0 270 > th dose dependent rect. 13 5
407 282.61 temperature 10.0 90 > th dose dependent rect. 16 15
420 282.70 wind 9.0 90 > th dose independent sin 13 NA
479 282.96 humidity 90.0 90 < th dose dependent rect. 16 5
495 283.04 radiation 1.0 90 < th dose independent rect. 7 20
509 283.07 temperature 10.0 10 > th dose dependent rect. 16 15
510 283.08 radiation 1.0 90 > th dose independent sin 14 NA
512 283.08 wind 9.0 90 > th dose dependent rect. 13 6
537 283.14 temperature 10.0 90 > th dose dependent rect. 3 15
546 283.15 atmosphere 995.0 90 > th dose independent rect. 3 15
548 283.16 precipitation 0.1 90 < th dose independent rect. 3 15
553 283.16 precipitation 0.1 90 < th dose dependent rect. 3 15
561 283.21 wind 3.0 270 > th dose independent rect. 13 5
564 283.22 wind 9.0 90 > th dose dependent sin 13 NA
566 283.24 radiation 10.0 10 < th dose independent rect. 16 15
567 283.24 atmosphere 1015.0 90 < th dose independent rect. 18 22
590 283.45 temperature 20.0 270 > th dose dependent rect. 13 19
600 283.48 temperature 25.0 90 > th dose independent rect. 16 18
609 283.51 temperature 15.0 90 > th dose independent rect. 3 15
641 283.64 wind 1.0 90 > th dose independent rect. 18 22
643 283.66 precipitation 0.1 90 < th dose independent rect. 16 15
645 283.66 precipitation 0.1 90 < th dose dependent rect. 16 15
652 283.70 wind 9.0 10 > th dose independent rect. 18 1
655 283.70 wind 9.0 10 > th dose dependent rect. 18 1
695 283.89 wind 9.0 90 < th dose independent rect. 18 9
696 283.89 temperature 10.0 90 > th dose independent rect. 18 9
697 283.89 humidity 50.0 90 > th dose independent rect. 18 9
698 283.89 radiation 20.0 90 < th dose independent rect. 18 9
703 283.89 atmosphere 1015.0 90 < th dose independent rect. 3 15
709 283.90 temperature 20.0 270 > th dose dependent rect. 13 5
710 283.90 radiation 20.0 90 < th dose dependent rect. 18 9
714 283.91 atmosphere 995.0 90 > th dose independent rect. 18 9
761 284.03 temperature 25.0 270 > th dose independent rect. 13 5
779 284.07 atmosphere 995.0 90 > th dose independent rect. 16 15
782 284.09 radiation 1.0 90 < th dose independent sin 14 NA
785 284.11 radiation 10.0 30 < th dose independent rect. 4 14
801 284.20 precipitation 0.1 90 < th dose independent rect. 18 9
803 284.20 precipitation 0.1 90 < th dose dependent rect. 18 9
842 284.40 radiation 1.0 30 < th dose dependent sin 14 NA
848 284.45 precipitation 0.1 1440 < th dose independent rect. 18 1
851 284.45 precipitation 0.1 1440 < th dose dependent rect. 18 1
898 284.59 radiation 30.0 90 < th dose independent rect. 16 15
904 284.61 temperature 10.0 90 > th dose independent rect. 7 9
905 284.61 atmosphere 1015.0 90 < th dose independent rect. 7 9
907 284.61 temperature 10.0 90 > th dose independent rect. 16 15
933 284.74 temperature 20.0 90 > th dose dependent rect. 16 6
943 284.77 precipitation 0.1 90 < th dose independent rect. 7 9
944 284.77 precipitation 0.1 90 < th dose dependent rect. 7 9
957 284.86 radiation 10.0 10 < th dose independent rect. 16 21
972 284.93 wind 9.0 10 < th dose dependent rect. 16 2
973 284.93 temperature 10.0 10 > th dose dependent rect. 4 15
982 284.96 radiation 1.0 270 > th dose independent rect. 13 17
998 285.00 wind 9.0 90 < th dose independent rect. 7 9