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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0253600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.29 (0.0434) R2 : 0.195
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.889 (0.103) R2dC : 0.138 R2C : 0.0732
β3 : 0.709 (0.0942) R2dE : 0.127 R2E : -0.00124
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.444 (0.0983) R2dN8 : 0.0566 R2N8 : -0.0202
σ : 0.795
deviance : 291.13
__
_____
C
peak time of C : 12.4
E
wheather : temperature
threshold : 24.94
memory length : 266
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
269.37 0.771 3.3 0.295 0.932 0.773 1.74 0.812 0.467 12.6 24.98 264 -- --
271.24 0.767 3.28 0.529 0.932 0.805 1.55 -- 0.533 12.5 24.99 258 -- --
281.73 0.782 3.28 0.479 0.917 0.761 -- 0.383 0.493 12.6 24.9 266 -- --
282.08 0.782 3.27 0.6 0.922 0.799 -- -- 0.552 12.6 24.91 266 -- --
313.38 0.824 3.31 0.468 -- 0.915 -- 0.553 0.46 -- 25.19 641 -- --
303.94 0.817 3.35 0.302 0.85 -- 1.55 -- 0.158 10.4 -- -- -- --
313.74 0.829 3.35 0.363 0.844 -- -- -- 0.162 10.3 -- -- -- --
314.13 0.825 3.29 0.626 -- 0.934 -- -- 0.509 -- 25.15 641 -- --
291.13 0.795 3.29 -- 0.889 0.709 -- -- 0.444 12.4 24.94 266 -- --
357.09 0.883 3.37 0.35 -- -- -- -- 0.16 -- -- -- -- --
317.21 0.833 3.36 -- 0.842 -- -- -- 0.121 10.3 -- -- -- --
324.01 0.838 3.31 -- -- 0.839 -- -- 0.407 -- 25.1 640 -- --
360.33 0.886 3.38 -- -- -- -- -- 0.121 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 253.13 atmosphere 995 90 > th dose dependent rect. 4 12
3 255.38 atmosphere 1000 10 > th dose dependent rect. 5 11
4 255.71 temperature 30 10 < th dose dependent rect. 8 8
15 258.25 temperature 25 270 < th dose independent rect. 9 6
31 259.68 temperature 25 270 < th dose independent rect. 3 13
35 259.96 atmosphere 1000 720 > th dose dependent rect. 4 1
38 260.05 temperature 25 270 < th dose independent sin 1 NA
44 260.33 temperature 25 270 > th dose independent rect. 1 16
45 260.34 temperature 25 270 > th dose independent sin 1 NA
47 260.42 temperature 30 10 < th dose dependent rect. 5 11
48 260.49 temperature 30 90 < th dose dependent rect. 4 12
53 260.72 temperature 20 10 > th dose dependent rect. 7 13
93 261.78 temperature 30 90 < th dose dependent rect. 11 5
101 262.02 temperature 25 270 > th dose independent rect. 6 11
102 262.04 temperature 25 270 < th dose independent rect. 20 20
118 262.61 atmosphere 995 720 > th dose dependent rect. 3 4
125 262.81 temperature 20 10 > th dose dependent rect. 7 16
161 263.48 temperature 25 270 < th dose independent rect. 11 2
168 263.60 temperature 30 270 < th dose dependent rect. 11 2
209 264.46 temperature 25 270 < th dose independent rect. 1 22
211 264.52 temperature 20 10 > th dose dependent sin 0 NA
212 264.54 atmosphere 1005 90 > th dose independent rect. 4 12
214 264.56 temperature 25 720 < th dose dependent rect. 6 7
229 264.84 temperature 25 30 < th dose independent rect. 8 9
233 264.87 temperature 30 10 < th dose dependent sin 23 NA
259 265.10 atmosphere 1015 10 < th dose dependent rect. 7 13
272 265.27 temperature 10 10 > th dose dependent sin 23 NA
286 265.46 temperature 20 10 > th dose dependent rect. 7 22
292 265.55 atmosphere 1005 10 > th dose independent rect. 5 11
297 265.65 atmosphere 1005 720 > th dose independent rect. 4 1
300 265.66 atmosphere 1015 90 < th dose dependent rect. 7 12
343 266.01 atmosphere 1000 10 > th dose dependent sin 1 NA
349 266.07 temperature 25 720 > th dose independent rect. 9 1
351 266.07 temperature 15 720 > th dose dependent rect. 6 5
370 266.19 atmosphere 1000 270 > th dose dependent sin 3 NA
426 266.72 temperature 25 720 < th dose dependent rect. 7 3
439 266.83 temperature 20 720 > th dose dependent rect. 7 1
450 266.92 temperature 20 10 > th dose dependent rect. 9 11
456 266.98 temperature 25 720 > th dose independent rect. 2 10
464 267.01 atmosphere 1015 10 < th dose dependent sin 1 NA
506 267.39 temperature 25 720 > th dose independent rect. 7 5
633 268.18 temperature 25 30 > th dose independent rect. 7 12
639 268.21 temperature 20 270 > th dose dependent rect. 6 10
671 268.41 temperature 25 720 < th dose independent rect. 9 1
689 268.52 temperature 20 10 > th dose dependent rect. 9 14
739 268.79 temperature 25 270 < th dose independent rect. 7 23
778 269.02 temperature 25 270 > th dose dependent sin 6 NA
799 269.17 atmosphere 1015 720 < th dose dependent rect. 23 11
848 269.44 temperature 25 270 < th dose independent no NA NA
892 269.64 temperature 25 30 > th dose independent rect. 9 10
899 269.66 temperature 25 270 > th dose independent rect. 6 23
967 270.03 temperature 25 270 > th dose independent no NA NA