BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0253600 Os03g0253600|AK119506
         (335 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G41610.1  | chr2:17347181-17348113 FORWARD LENGTH=311          169   2e-42

>AT2G41610.1 | chr2:17347181-17348113 FORWARD LENGTH=311
          Length = 310

 Score =  169 bits (428), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 97/299 (32%), Positives = 140/299 (46%), Gaps = 6/299 (2%)

Query: 34  RQILKCTRWQLEETTDFVTCPYHYYCDSSYPGDYHXXXXXXXXXXXXYCFLSTLAFTVLD 93
           +   KCT+WQ E+T D + CP+HY+CDS Y GDY               +L+TL   V  
Sbjct: 13  KTFFKCTKWQFEDTLDPINCPFHYFCDSIYAGDYPQITDVLVFFFVTVTYLTTLIVVVRK 72

Query: 94  LAXXXXXXXXXXXXXXXXXKYXXXXXXXXXXXXXXXXAKGQRINAVFXXXXXXXXXXXXX 153
           +                  +Y                AKGQRIN +F             
Sbjct: 73  VISRRRRENDDDGDDDKARRYLLPSGPISLPLIILILAKGQRINTLFPISIFGPAILQLV 132

Query: 154 XXXXXXFRNEADGDIRYAVLEASTVSGVLHASLYLDAVVLPYYTGLEALRWSQFSGECAT 213
                 F N  + +  +   EAST+SG+LHASLYLDAV+LPYYTG +AL  S FSG C +
Sbjct: 133 QLSVLLFENNIEKEASFVFFEASTISGILHASLYLDAVILPYYTGFDALVTSTFSGVCKS 192

Query: 214 CLCRMEPLVVGGTAVRYRGLSKTALAIIFALCSRMVCRIYGEERLSA---WTRSALEAAG 270
           C+CR EPL+VGG  V YRG S T   ++  L  R++C++  EE ++      ++ ++   
Sbjct: 193 CICRKEPLIVGGKIVSYRGWSSTTFLVVGVLFLRIICKLCKEEGINKRVLVVKNVVQGLT 252

Query: 271 WVFVAADAVYLVGWVAIEGGAVAVLAYSLVAGLVFLSVFGKVYRFLAWLETRQSQWKSS 329
            + +  D VYL     +E     +L    V G + L +   V   +  L +R+   K+S
Sbjct: 253 LLVLIRDCVYLAVMSPVEE---PILFRVFVFGFLLLLICVYVITKVCCLVSRRQSKKTS 308



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.136    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,498,457
Number of extensions: 180294
Number of successful extensions: 432
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 430
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 236
Effective length of database: 8,392,385
Effective search space: 1980602860
Effective search space used: 1980602860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 112 (47.8 bits)