BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0251800 Os03g0251800|AK067333
(527 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0251800 Similar to Possible OmpA family member precursor 993 0.0
Os10g0188100 Transcription initiation factor IIF, alpha sub... 499 e-141
>Os03g0251800 Similar to Possible OmpA family member precursor
Length = 527
Score = 993 bits (2566), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/527 (91%), Positives = 482/527 (91%)
Query: 1 MGVSADGLVLKAACERCGSSSDLHGTGCRHATLCVSCGSAMARSGDCCPVCAAPIASLIR 60
MGVSADGLVLKAACERCGSSSDLHGTGCRHATLCVSCGSAMARSGDCCPVCAAPIASLIR
Sbjct: 1 MGVSADGLVLKAACERCGSSSDLHGTGCRHATLCVSCGSAMARSGDCCPVCAAPIASLIR 60
Query: 61 EYNVLVDTTGEKQYTIGKFTTGVPPFSDRENAGSRSWSLHPEGQQGRQPTGNIWENCSNR 120
EYNVLVDTTGEKQYTIGKFTTGVPPFSDRENAGSRSWSLHPEGQQGRQPTGNIWENCSNR
Sbjct: 61 EYNVLVDTTGEKQYTIGKFTTGVPPFSDRENAGSRSWSLHPEGQQGRQPTGNIWENCSNR 120
Query: 121 KSCILEDDTGDYQYQGQIQGLQSAASTYYLLMMHGKDVHAVPADSWYNFSKISQYKQLTL 180
KSCILEDDTGDYQYQGQIQGLQSAASTYYLLMMHGKDVHAVPADSWYNFSKISQYKQLTL
Sbjct: 121 KSCILEDDTGDYQYQGQIQGLQSAASTYYLLMMHGKDVHAVPADSWYNFSKISQYKQLTL 180
Query: 181 EEAEEKMSRRRSTATGYGRWMMKAATNGAAAFSSDVTQLDDANEGETDQVHLKKGNKNGD 240
EEAEEKMSRRRSTATGYGRWMMKAATNGAAAFSSDVTQLDDANEGETDQVHLKKGNKNGD
Sbjct: 181 EEAEEKMSRRRSTATGYGRWMMKAATNGAAAFSSDVTQLDDANEGETDQVHLKKGNKNGD 240
Query: 241 ENKSDKGSGEERAHVPMTKGREEEGSKDRDFDLDDEIEKGDDWEHEEIFTXXXXXXXXXX 300
ENKSDKGSGEERAHVPMTKGREEEGSKDRDFDLDDEIEKGDDWEHEEIFT
Sbjct: 241 ENKSDKGSGEERAHVPMTKGREEEGSKDRDFDLDDEIEKGDDWEHEEIFTDDDEAVDVDP 300
Query: 301 XXXXXLADPEIPAPPEIKQDDNEKHXXXXXXXXXXXXXXXXRRAAGQNXXXXXXXXXXXX 360
LADPEIPAPPEIKQDDNEKH RRAAGQN
Sbjct: 301 EEGGDLADPEIPAPPEIKQDDNEKHGGVGLSKSGKELKKLLRRAAGQNESDDDDEDTDED 360
Query: 361 XXPSPVLAPKQQDQLKSEPQEDNHSKPTVLGHPYSTPHVSKSNQKRRQRGDDSKTCATPK 420
PSPVLAPKQQDQLKSEPQEDNHSKPTVLGHPYSTPHVSKSNQKRRQRGDDSKTCATPK
Sbjct: 361 ESPSPVLAPKQQDQLKSEPQEDNHSKPTVLGHPYSTPHVSKSNQKRRQRGDDSKTCATPK 420
Query: 421 KPKIEPDTKKIVVKEETSCSLEPTSEPFASARSDTNVSPITVEEIRVVLRLYAPIAMRDF 480
KPKIEPDTKKIVVKEETSCSLEPTSEPFASARSDTNVSPITVEEIRVVLRLYAPIAMRDF
Sbjct: 421 KPKIEPDTKKIVVKEETSCSLEPTSEPFASARSDTNVSPITVEEIRVVLRLYAPIAMRDF 480
Query: 481 SKDFMPRFSPRLRSPEDREVFLANLRKISHLQKINGQKYIILLEEYK 527
SKDFMPRFSPRLRSPEDREVFLANLRKISHLQKINGQKYIILLEEYK
Sbjct: 481 SKDFMPRFSPRLRSPEDREVFLANLRKISHLQKINGQKYIILLEEYK 527
>Os10g0188100 Transcription initiation factor IIF, alpha subunit family protein
Length = 529
Score = 499 bits (1285), Expect = e-141, Method: Compositional matrix adjust.
Identities = 282/541 (52%), Positives = 346/541 (63%), Gaps = 26/541 (4%)
Query: 1 MGVSADGLVLKAACERCGSSSDLHGTGCRHATLCVSCGSAMARSGDCCPVCAAPIASLIR 60
MG SAD LVLKAACE CGS SDL+GT C+H TLC SCG +MA SG C VC+API +LIR
Sbjct: 1 MG-SAD-LVLKAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALSGARCLVCSAPITNLIR 58
Query: 61 EYNVLVDTTGEKQYTIGKFTTGVPPFSDRENAGSRSWSLHPEGQQGRQPTGNIWENCSNR 120
EYNV + T +K ++IG+F TG+PPFS +++A ++ WSLH EG QGRQ N+ E NR
Sbjct: 59 EYNVRANATTDKSFSIGRFVTGLPPFSKKKSAENK-WSLHKEGLQGRQIPENMREKY-NR 116
Query: 121 KSCILEDDTGDYQYQGQIQGLQSAASTYYLLMMHGKDVHAVPADSWYNFSKISQYKQLTL 180
K ILED+TG YQYQGQ++G QS+ +TYYLLMMHGK+ HA PA SWYNFSKI+QYKQLTL
Sbjct: 117 KPWILEDETGQYQYQGQMEGSQSSTATYYLLMMHGKEFHAYPAGSWYNFSKIAQYKQLTL 176
Query: 181 EEAEEKMSRRRSTATGYGRWMMKAATNGAAAFSSDVTQLDDANEGETDQVHLKKGNKNGD 240
EEAEEKM++R+++ATGY RWMMKAATNG AAF SDV +L+ N E + KKG N +
Sbjct: 177 EEAEEKMNKRKTSATGYERWMMKAATNGPAAFGSDVKKLEPTNGTEKENARPKKGKNNEE 236
Query: 241 ENKSDKG------SGEERAHVPMTKGR---EEEGSKDRDFDLDDEIEKGDDWEHEEIFTX 291
N SDKG + + + K +EEG KD DFDLDDEIEKGDDWEHEE FT
Sbjct: 237 GNNSDKGEEDEEEEAARKNRLALNKKSMDDDEEGGKDLDFDLDDEIEKGDDWEHEETFTD 296
Query: 292 XXXXXXXXXXXXXXLADPEIPAPPEIKQDDNEKHXXXXXXXXXXXXXXXXRRAAGQN--X 349
LA PEIPAPPEIKQDD E +AAG N
Sbjct: 297 DDEAVDIDPEERADLA-PEIPAPPEIKQDDEENEEEGGLSKSGKELKKLLGKAAGLNESD 355
Query: 350 XXXXXXXXXXXXXPSPVLAPKQQDQLKSEPQEDNHSKPTVLGHPYSTPHVSKSNQKRRQ- 408
SPVLAPKQ+DQ K EP +++ +KPT GH TP SKS QKR+
Sbjct: 356 ADEDDEDDDQEDESSPVLAPKQKDQPKDEPVDNSPAKPTPSGHARGTPPASKSKQKRKSG 415
Query: 409 RGDDSKTC--ATPKKPKIEPDTKKIVVKEETSCSLEPTSEPFASARSDTNVSPITVEEIR 466
GDDSK A KK K DTK V K+ET S +P S+ A++++ NVSP+T +EIR
Sbjct: 416 GGDDSKASGGAASKKAK---DTKPSVAKDETPSSSKPASKATAASKTSANVSPVTEDEIR 472
Query: 467 VVLRLYAPIAMRDFSKDFMPRFSPRLRSPEDREVFLANLRKISHLQKINGQKYIILLEEY 526
VL AP+ ++D + RF RLR PED+ F L+KIS +QK NG Y++L ++
Sbjct: 473 TVLLAVAPVT----TQDLVSRFKSRLRGPEDKNAFAEILKKISKIQKTNGHNYVVLRDDK 528
Query: 527 K 527
K
Sbjct: 529 K 529
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.129 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,783,487
Number of extensions: 840796
Number of successful extensions: 2633
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2625
Number of HSP's successfully gapped: 2
Length of query: 527
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 422
Effective length of database: 11,553,331
Effective search space: 4875505682
Effective search space used: 4875505682
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 158 (65.5 bits)