BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0250900 Os03g0250900|Os03g0250900
         (220 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0250900  Conserved hypothetical protein                      350   4e-97
Os03g0251100  Conserved hypothetical protein                       67   1e-11

>Os03g0250900 Conserved hypothetical protein
          Length = 220

 Score =  350 bits (898), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 176/220 (80%), Positives = 176/220 (80%)

Query: 1   MASQRQKAAVSLGRLESCEQHCWFKSWLPRATLRHTPRSANXXXXXXXXXXXXXXXXXXX 60
           MASQRQKAAVSLGRLESCEQHCWFKSWLPRATLRHTPRSAN                   
Sbjct: 1   MASQRQKAAVSLGRLESCEQHCWFKSWLPRATLRHTPRSANGSGHLGGGAGDGVGTGVGA 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXLWPCSTSPPLTAEAKTKITDAKNKAEFIARLLAIV 120
                                    LWPCSTSPPLTAEAKTKITDAKNKAEFIARLLAIV
Sbjct: 61  GVGGTTRAGAGAGVSVGVGAVARHGLWPCSTSPPLTAEAKTKITDAKNKAEFIARLLAIV 120

Query: 121 GICVFDAFRPDSQLSSTAMLYTAGSRLEASSYRTPRSKLWYDHYMSESALFSPLAAVDSE 180
           GICVFDAFRPDSQLSSTAMLYTAGSRLEASSYRTPRSKLWYDHYMSESALFSPLAAVDSE
Sbjct: 121 GICVFDAFRPDSQLSSTAMLYTAGSRLEASSYRTPRSKLWYDHYMSESALFSPLAAVDSE 180

Query: 181 ENRVMFSEDSIYIRAPDCDGYSSDRENAAHASGGDVVLEL 220
           ENRVMFSEDSIYIRAPDCDGYSSDRENAAHASGGDVVLEL
Sbjct: 181 ENRVMFSEDSIYIRAPDCDGYSSDRENAAHASGGDVVLEL 220



>Os03g0251100 Conserved hypothetical protein
          Length = 146

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/41 (78%), Positives = 32/41 (78%)

Query: 1  MASQRQKAAVSLGRLESCEQHCWFKSWLPRATLRHTPRSAN 41
          MASQRQ AAVSLGRLESCEQH WFKS LPR TL H  R  N
Sbjct: 1  MASQRQTAAVSLGRLESCEQHAWFKSGLPRPTLMHALRLIN 41



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.128    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,849,755
Number of extensions: 175431
Number of successful extensions: 386
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 386
Number of HSP's successfully gapped: 3
Length of query: 220
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 123
Effective length of database: 11,971,043
Effective search space: 1472438289
Effective search space used: 1472438289
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)