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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0251100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.19 (0.0526) R2 : 0.108
β1 : -1.3 (0.193) R2dD : 0.093 R2D : 0.0596
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.483 (0.112) R2dN8 : 0.0484 R2N8 : 0.015
σ : 0.988
deviance : 446.79
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
422.26 0.965 3.18 -1.23 0.273 1.74 0.25 2.27 -0.35 11.5 0.8399 1444 -- --
428.39 0.964 3.13 -1.29 0.349 1.6 0.304 -- -0.268 11.6 1.061 1483 -- --
422.51 0.957 3.18 -1.23 0.273 1.74 -- 2.28 -0.35 11.5 0.78 1444 -- --
428.42 0.964 3.13 -1.3 0.335 1.5 -- -- -0.286 11.7 1.545 1478 -- --
424.36 0.959 3.19 -1.22 -- 1.75 -- 2.37 -0.354 -- 0.7791 1407 -- --
442.05 0.986 3.18 -1.31 0.259 -- 0.363 -- -0.481 11.8 -- -- -- --
442.62 0.985 3.18 -1.3 0.258 -- -- -- -0.48 11.7 -- -- -- --
427.52 0.963 3.15 -1 -- 1.25 -- -- -0.322 -- 1.07 1397 -- --
428.57 0.964 3.07 -- 0.24 1.19 -- -- -0.0119 11.5 0.06016 47520 -- --
446.79 0.988 3.19 -1.3 -- -- -- -- -0.483 -- -- -- -- --
486.97 1.03 3.15 -- 0.274 -- -- -- -0.335 12 -- -- -- --
431.97 0.968 3.08 -- -- 1.2 -- -- -0.0119 -- 0.01726 47520 -- --
491.7 1.04 3.16 -- -- -- -- -- -0.338 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 415.88 wind 1 10 < th dose dependent rect. 13 10
5 419.79 wind 1 10 < th dose independent rect. 22 1
7 419.79 wind 1 10 < th dose dependent rect. 22 1
9 420.31 radiation 1 1440 < th dose dependent rect. 17 14
14 420.91 radiation 1 1440 < th dose dependent rect. 14 17
15 421.09 temperature 20 720 > th dose dependent rect. 22 11
17 421.12 wind 1 30 < th dose independent rect. 13 1
19 421.13 radiation 1 1440 < th dose dependent sin 12 NA
21 421.17 temperature 20 720 > th dose dependent rect. 22 8
26 421.39 temperature 20 720 > th dose dependent rect. 23 3
29 421.48 radiation 1 1440 < th dose dependent rect. 17 1
41 421.55 temperature 30 720 < th dose dependent rect. 22 6
48 421.72 atmosphere 1015 1440 > th dose independent rect. 24 11
49 421.77 temperature 20 720 > th dose dependent rect. 23 5
51 421.81 temperature 20 720 > th dose dependent rect. 18 16
58 421.84 radiation 1 1440 < th dose dependent rect. 17 22
62 421.89 radiation 1 1440 < th dose dependent rect. 17 20
65 421.90 atmosphere 1015 1440 < th dose independent rect. 24 11
85 422.11 atmosphere 1015 1440 > th dose dependent rect. 24 11
95 422.15 atmosphere 1015 1440 < th dose independent rect. 11 1
102 422.17 temperature 20 720 > th dose dependent sin 10 NA
109 422.20 atmosphere 1015 1440 > th dose dependent rect. 3 8
116 422.27 humidity 90 43200 < th dose independent rect. 21 1
125 422.32 atmosphere 1015 1440 > th dose independent rect. 10 1
140 422.32 atmosphere 1015 1440 > th dose dependent rect. 10 1
157 422.35 atmosphere 1015 1440 < th dose independent rect. 5 7
161 422.36 temperature 25 1440 > th dose independent rect. 6 5
162 422.36 humidity 80 43200 > th dose dependent rect. 17 7
174 422.43 humidity 80 43200 > th dose dependent rect. 18 5
184 422.49 atmosphere 1010 270 > th dose independent rect. 5 1
197 422.50 atmosphere 1015 1440 < th dose independent rect. 9 3
198 422.50 temperature 25 1440 < th dose independent rect. 6 5
200 422.50 radiation 1 1440 < th dose dependent rect. 4 20
206 422.52 radiation 1 1440 < th dose dependent rect. 4 15
209 422.52 radiation 1 1440 < th dose dependent rect. 21 22
211 422.53 humidity 90 43200 > th dose independent rect. 21 1
230 422.55 radiation 1 1440 < th dose dependent no NA NA
257 422.60 humidity 70 30 < th dose independent rect. 9 2
274 422.82 atmosphere 1010 270 > th dose dependent rect. 5 1
285 422.85 radiation 1 1440 < th dose dependent rect. 4 2
296 422.87 radiation 1 1440 < th dose dependent rect. 17 7
299 422.88 radiation 1 1440 < th dose dependent rect. 1 5
304 422.89 humidity 90 43200 > th dose dependent rect. 21 1
308 422.90 radiation 1 1440 < th dose dependent rect. 20 10
325 422.95 radiation 1 1440 < th dose dependent rect. 17 9
331 422.97 wind 1 30 < th dose dependent rect. 13 1
350 423.06 radiation 1 1440 > th dose independent rect. 14 17
351 423.06 radiation 1 1440 < th dose independent rect. 14 17
374 423.18 humidity 80 1440 > th dose dependent rect. 20 1
376 423.19 temperature 25 14400 > th dose independent rect. 19 1
383 423.22 temperature 10 720 > th dose dependent rect. 18 15
401 423.30 temperature 10 720 > th dose dependent rect. 21 9
403 423.31 humidity 90 43200 < th dose independent rect. 20 4
412 423.34 wind 7 43200 < th dose independent rect. 14 2
419 423.36 temperature 25 14400 < th dose independent rect. 19 1
425 423.38 wind 7 43200 > th dose independent rect. 14 2
428 423.38 radiation 1 1440 > th dose independent rect. 16 15
430 423.39 radiation 1 1440 < th dose independent rect. 16 15
433 423.40 radiation 1 1440 > th dose independent rect. 17 1
436 423.40 humidity 90 43200 < th dose independent rect. 16 9
454 423.47 atmosphere 1010 90 > th dose dependent rect. 8 1
518 423.62 radiation 1 1440 < th dose independent rect. 17 1
531 423.68 atmosphere 1015 43200 > th dose independent rect. 1 1
569 423.82 atmosphere 1015 1440 > th dose dependent rect. 10 10
579 423.83 atmosphere 1015 1440 > th dose dependent sin 2 NA
675 423.98 temperature 25 14400 > th dose independent rect. 17 4
706 424.03 wind 7 43200 < th dose independent rect. 14 4
722 424.05 radiation 1 1440 > th dose independent sin 13 NA
733 424.07 radiation 1 1440 < th dose dependent sin 1 NA
739 424.08 humidity 80 43200 > th dose dependent sin 17 NA
745 424.09 radiation 1 1440 < th dose independent sin 13 NA
776 424.16 temperature 30 720 < th dose dependent rect. 16 18
797 424.22 radiation 40 10 < th dose dependent rect. 8 9
849 424.31 humidity 90 43200 < th dose independent rect. 18 1
855 424.32 humidity 60 270 < th dose independent rect. 16 1
876 424.35 temperature 20 1440 > th dose dependent rect. 18 1
917 424.39 radiation 1 1440 > th dose independent rect. 5 13
918 424.39 temperature 25 1440 > th dose dependent rect. 10 1
921 424.40 humidity 90 43200 > th dose independent sin 17 NA
939 424.41 atmosphere 1015 43200 < th dose independent rect. 1 1
941 424.41 temperature 25 1440 > th dose dependent rect. 7 6
943 424.42 radiation 1 1440 < th dose independent rect. 5 13
945 424.42 radiation 1 1440 < th dose independent rect. 21 21
954 424.43 radiation 1 1440 < th dose independent rect. 1 17
957 424.43 radiation 20 270 > th dose dependent rect. 16 1
983 424.45 wind 5 43200 > th dose dependent rect. 14 1
984 424.45 temperature 20 270 < th dose dependent rect. 6 1
990 424.46 wind 5 43200 > th dose dependent rect. 12 4
993 424.47 atmosphere 1015 43200 > th dose independent rect. 10 1