BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0249100 Os03g0249100|AK106841
         (445 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0249100  Conserved hypothetical protein                      692   0.0  
Os09g0488800  Retrovirus capsid, C-terminal domain containin...   136   3e-32

>Os03g0249100 Conserved hypothetical protein
          Length = 445

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/426 (82%), Positives = 351/426 (82%)

Query: 20  RRAGGGRTTASEVDEKYAHVATPLHNHRGGSGGAKKTPRRAKSEGGGGADPAAYVAAVSC 79
           RRAGGGRTTASEVDEKYAHVATPLHNHRGGSGGAKKTPRRAKSEGGGGADPAAYVAAVSC
Sbjct: 20  RRAGGGRTTASEVDEKYAHVATPLHNHRGGSGGAKKTPRRAKSEGGGGADPAAYVAAVSC 79

Query: 80  SDCRFKQRLHAPASPGPGAVIRSLFVSLXXXXXXXXXXXXXXASGGDGGESEQWXXXXXX 139
           SDCRFKQRLHAPASPGPGAVIRSLFVSL              ASGGDGGESEQW      
Sbjct: 80  SDCRFKQRLHAPASPGPGAVIRSLFVSLTRRSTPRSSPSPTSASGGDGGESEQWRLAAAD 139

Query: 140 XXXXXXXXXXXXXXXXXXXXXXKHSLTELEMKLARLEARVLPTPTAAAFPVESFLXXXXX 199
                                 KHSLTELEMKLARLEARVLPTPTAAAFPVESFL     
Sbjct: 140 LSRRLAAATRTRDEALEETTRLKHSLTELEMKLARLEARVLPTPTAAAFPVESFLRAVST 199

Query: 200 XXXXXXXLTRALSNHLRSPVNPGPNLESFLNRAFHADFELDTEGDVHTADPAGRCEANLA 259
                  LTRALSNHLRSPVNPGPNLESFLNRAFHADFELDTEGDVHTADPAGRCEANLA
Sbjct: 200 ARAAVRSLTRALSNHLRSPVNPGPNLESFLNRAFHADFELDTEGDVHTADPAGRCEANLA 259

Query: 260 AYHSIAALTWEEVLLHGTKHYSEGLSRFCDAKMSEVVSSLGWARARAWPEPLLQAFFLAA 319
           AYHSIAALTWEEVLLHGTKHYSEGLSRFCDAKMSEVVSSLGWARARAWPEPLLQAFFLAA
Sbjct: 260 AYHSIAALTWEEVLLHGTKHYSEGLSRFCDAKMSEVVSSLGWARARAWPEPLLQAFFLAA 319

Query: 320 KGVWGVRLLARSVHPPLPVVRVDRGARFDSRFMEDAAAGRAGKLEPASVKMMVAPGFHXX 379
           KGVWGVRLLARSVHPPLPVVRVDRGARFDSRFMEDAAAGRAGKLEPASVKMMVAPGFH  
Sbjct: 320 KGVWGVRLLARSVHPPLPVVRVDRGARFDSRFMEDAAAGRAGKLEPASVKMMVAPGFHVY 379

Query: 380 XXXXXXXXXXXXXFYXXXXXXRTGGHRDGGSIANGSVGLGSSCSDVNGSATDAVDGCNNQ 439
                        FY      RTGGHRDGGSIANGSVGLGSSCSDVNGSATDAVDGCNNQ
Sbjct: 380 VACAGVVKCKVVCFYSSSSSSRTGGHRDGGSIANGSVGLGSSCSDVNGSATDAVDGCNNQ 439

Query: 440 SSSVVT 445
           SSSVVT
Sbjct: 440 SSSVVT 445



>Os09g0488800 Retrovirus capsid, C-terminal domain containing protein
          Length = 610

 Score =  136 bits (343), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 94/158 (59%), Gaps = 6/158 (3%)

Query: 224 NLESFLNRAFHADFE---LDTEGDVHTADPAGRCEANLAAYHSIAALTWEEVLLHGTKHY 280
           +LE+ +N+A + DFE       G     DP    + + A++ ++  L+W EVL  GTK+Y
Sbjct: 442 HLEALMNQAMYQDFENCTFQKNGSPRCLDPKQGSQESFASFVALRNLSWNEVLRKGTKYY 501

Query: 281 SEGLSRFCDAKMSEVVSSL-GWARARAWPEPLLQAFFLAAKGVWGVRLLARSVHPPLPVV 339
           SE  SRFCD KMS +VS+L  W+R   WPE LLQ FF+AAK VW + LLA S  P L ++
Sbjct: 502 SEDFSRFCDQKMSCIVSTLKNWSRP--WPEQLLQCFFVAAKCVWLLHLLAFSFTPALTIM 559

Query: 340 RVDRGARFDSRFMEDAAAGRAGKLEPASVKMMVAPGFH 377
           RV+    FD  +MED    +     P  VK+MV PGF+
Sbjct: 560 RVEESRVFDQMYMEDILPDKQQLHNPCQVKIMVMPGFY 597



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.132    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,009,012
Number of extensions: 674815
Number of successful extensions: 3320
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 3317
Number of HSP's successfully gapped: 2
Length of query: 445
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 341
Effective length of database: 11,605,545
Effective search space: 3957490845
Effective search space used: 3957490845
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)