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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0488800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Retrovirus capsid, C-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.95 (0.0292) R2 : 0.641
β1 : -0.703 (0.106) R2dD : 0.0355 R2D : -0.00698
β2 : 4.88 (0.256) R2dC : 3.45 R2C : -4.78
β3 : -6.63 (0.281) R2dE : 5.3 R2E : -2.84
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.447 (0.0622) R2dN8 : 0.0551 R2N8 : 0.0635
σ : 0.542
deviance : 135.3
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_____
C
peak time of C : 3.97
E
wheather : temperature
threshold : 30
memory length : 791
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17.2
open length of G : 9.67

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
134.58 0.545 4.95 -0.668 4.84 -6.58 1.79 -2.29 -0.448 3.97 30.01 787 17.2 9.67
136.94 0.545 4.98 -0.847 4.84 -6.58 0.14 -- -0.522 3.97 30.1 787 17.3 9.6
135.04 0.541 4.95 -0.691 4.88 -6.63 -- -0.374 -0.449 3.97 30 790 17.2 9.67
135.3 0.542 4.95 -0.703 4.88 -6.63 -- -- -0.447 3.97 30 791 17.2 9.67
173.71 0.614 5 -0.843 -- -2.44 -- -1.26 -0.569 -- 28.61 1064 17 9.62
200.55 0.664 5.08 -0.48 1.63 -- 0.643 -- -0.605 19.5 -- -- -- --
201.67 0.665 5.08 -0.494 1.63 -- -- -- -0.603 19.4 -- -- -- --
168.88 0.605 4.98 -0.638 -- -2.44 -- -- -0.446 -- 28.7 1039 16.7 10.9
148.19 0.567 4.94 -- 4.84 -6.58 -- -- -0.414 3.95 30.55 791 17.2 9.68
343.8 0.866 5.04 -0.52 -- -- -- -- -0.63 -- -- -- -- --
208.1 0.675 5.06 -- 1.64 -- -- -- -0.548 19.4 -- -- -- --
180.39 0.626 4.99 -- -- -2.36 -- -- -0.405 -- 28.82 1042 16.6 11.2
350.93 0.874 5.03 -- -- -- -- -- -0.572 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 146.74 temperature 10.0 90 > th dose dependent rect. 14 15
3 150.71 temperature 30.0 720 < th dose independent rect. 17 10
6 152.01 temperature 10.0 270 > th dose dependent rect. 12 16
11 152.48 temperature 30.0 720 < th dose independent rect. 16 13
15 152.77 temperature 30.0 720 < th dose independent rect. 16 5
19 153.39 temperature 30.0 720 < th dose independent rect. 17 3
62 156.98 temperature 25.0 720 > th dose dependent rect. 16 17
71 157.48 humidity 70.0 720 > th dose independent rect. 18 10
76 157.95 humidity 70.0 720 > th dose independent rect. 17 12
82 158.17 radiation 1.0 90 < th dose dependent rect. 5 22
90 158.40 humidity 70.0 720 > th dose independent rect. 17 3
94 158.47 temperature 25.0 720 > th dose dependent rect. 16 8
98 158.62 temperature 30.0 90 < th dose independent rect. 17 10
103 158.72 temperature 30.0 720 > th dose independent rect. 17 16
110 158.92 temperature 25.0 720 > th dose dependent sin 14 NA
114 158.98 radiation 1.0 90 < th dose independent rect. 5 22
126 159.30 temperature 30.0 1440 > th dose dependent rect. 15 1
131 159.41 temperature 30.0 720 > th dose independent rect. 17 2
157 159.55 temperature 30.0 1440 > th dose dependent rect. 14 5
174 159.58 temperature 30.0 720 < th dose independent sin 12 NA
177 159.61 precipitation 0.1 90 < th dose independent rect. 14 15
179 159.61 precipitation 0.1 90 < th dose dependent rect. 14 15
180 159.63 radiation 10.0 270 < th dose dependent sin 19 NA
182 159.66 radiation 1.0 270 > th dose independent sin 20 NA
183 159.67 radiation 1.0 90 < th dose independent rect. 17 10
305 160.32 temperature 30.0 720 > th dose independent sin 12 NA
347 160.50 temperature 25.0 720 > th dose dependent rect. 17 1
364 160.56 humidity 70.0 720 > th dose independent rect. 16 18
366 160.57 radiation 1.0 90 < th dose independent rect. 8 19
370 160.58 temperature 30.0 1440 > th dose dependent no NA NA
483 160.68 humidity 70.0 90 > th dose independent rect. 17 10
484 160.70 radiation 1.0 90 < th dose independent rect. 12 15
491 160.74 radiation 1.0 270 < th dose independent sin 20 NA
497 160.81 temperature 30.0 1440 > th dose dependent rect. 17 23
504 160.93 radiation 1.0 720 > th dose dependent rect. 17 13
506 160.96 radiation 10.0 90 < th dose dependent rect. 17 10
508 160.98 temperature 15.0 270 > th dose dependent rect. 13 3
527 161.03 humidity 80.0 1440 < th dose dependent rect. 17 2
529 161.04 humidity 70.0 720 > th dose independent sin 11 NA
559 161.15 radiation 1.0 90 < th dose dependent rect. 8 19
566 161.18 humidity 80.0 1440 < th dose dependent rect. 16 4
581 161.30 humidity 50.0 270 > th dose independent rect. 16 21
676 162.02 radiation 1.0 90 > th dose independent rect. 14 5
691 162.10 radiation 20.0 270 < th dose dependent rect. 15 9
697 162.15 radiation 10.0 270 < th dose independent rect. 15 9
708 162.30 wind 9.0 43200 < th dose independent rect. 19 20
725 162.40 wind 9.0 43200 > th dose independent rect. 19 20
729 162.41 temperature 15.0 270 > th dose dependent rect. 12 5
755 162.47 radiation 10.0 270 > th dose independent sin 16 NA
757 162.47 wind 7.0 43200 > th dose dependent rect. 19 20
773 162.48 temperature 30.0 1440 < th dose independent rect. 18 22
776 162.51 humidity 50.0 270 > th dose independent rect. 16 8
782 162.53 temperature 30.0 1440 < th dose independent rect. 14 21
783 162.54 humidity 70.0 720 < th dose independent sin 11 NA
784 162.54 humidity 70.0 1440 < th dose dependent rect. 16 15
798 162.57 wind 9.0 43200 < th dose independent rect. 17 22
810 162.58 humidity 70.0 1440 < th dose independent rect. 18 13
820 162.58 temperature 10.0 720 > th dose dependent rect. 13 11
829 162.63 humidity 70.0 1440 < th dose independent rect. 18 2
837 162.63 temperature 30.0 1440 > th dose independent rect. 9 10
847 162.63 temperature 30.0 1440 < th dose independent rect. 9 16
858 162.64 radiation 1.0 720 < th dose independent rect. 17 10
860 162.64 temperature 30.0 1440 < th dose independent rect. 9 19
861 162.64 temperature 30.0 1440 > th dose independent rect. 14 21
868 162.66 temperature 30.0 1440 < th dose independent rect. 9 23
875 162.68 temperature 30.0 1440 < th dose independent rect. 9 12
886 162.71 radiation 1.0 270 > th dose dependent rect. 13 5
925 162.82 temperature 30.0 1440 > th dose independent rect. 18 22
949 162.85 wind 9.0 43200 > th dose independent rect. 17 22
970 162.92 radiation 10.0 270 < th dose dependent rect. 8 15
978 162.97 temperature 30.0 1440 > th dose independent rect. 13 6
996 162.97 radiation 40.0 90 < th dose independent rect. 14 15