BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0226600 Os03g0226600|AK121288
(1176 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0226600 Conserved hypothetical protein 2120 0.0
Os10g0105400 Conserved hypothetical protein 669 0.0
>Os03g0226600 Conserved hypothetical protein
Length = 1176
Score = 2120 bits (5493), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1042/1176 (88%), Positives = 1042/1176 (88%)
Query: 1 MPGVAAETAVASASGSGIWSRRRDEITLDRLQKFWNGLPPQARQELLKLDKQTLIEQARK 60
MPGVAAETAVASASGSGIWSRRRDEITLDRLQKFWNGLPPQARQELLKLDKQTLIEQARK
Sbjct: 1 MPGVAAETAVASASGSGIWSRRRDEITLDRLQKFWNGLPPQARQELLKLDKQTLIEQARK 60
Query: 61 NLYCSRCNGLLLESFMQIVMYGKTLQRDASDINRLNTTGETRIRQGEQEDPSVHPWGGLV 120
NLYCSRCNGLLLESFMQIVMYGKTLQRDASDINRLNTTGETRIRQGEQEDPSVHPWGGLV
Sbjct: 61 NLYCSRCNGLLLESFMQIVMYGKTLQRDASDINRLNTTGETRIRQGEQEDPSVHPWGGLV 120
Query: 121 ATKDGILTLLDCFVNAKSLRVLQNVFDNARAREREREMLYPDACGGSGRGWISQRLASYS 180
ATKDGILTLLDCFVNAKSLRVLQNVFDNARAREREREMLYPDACGGSGRGWISQRLASYS
Sbjct: 121 ATKDGILTLLDCFVNAKSLRVLQNVFDNARAREREREMLYPDACGGSGRGWISQRLASYS 180
Query: 181 RGYGTRETCALHTARLSCDTLVDFWSALSEETRLSLLRMKEEDFMERLMRRFESKRFCRD 240
RGYGTRETCALHTARLSCDTLVDFWSALSEETRLSLLRMKEEDFMERLMRRFESKRFCRD
Sbjct: 181 RGYGTRETCALHTARLSCDTLVDFWSALSEETRLSLLRMKEEDFMERLMRRFESKRFCRD 240
Query: 241 CRRNVIREFKELKELKRMRREPRCTSWFCVADTDFQCEVFEDAVIIDWRQTLSEADGSYH 300
CRRNVIREFKELKELKRMRREPRCTSWFCVADTDFQCEVFEDAVIIDWRQTLSEADGSYH
Sbjct: 241 CRRNVIREFKELKELKRMRREPRCTSWFCVADTDFQCEVFEDAVIIDWRQTLSEADGSYH 300
Query: 301 HFEWAIGTDEGQSDVFGFEDVGMNVQVHRDGINLDQFEDYFITLRAWKLDGTYTELCVKA 360
HFEWAIGTDEGQSDVFGFEDVGMNVQVHRDGINLDQFEDYFITLRAWKLDGTYTELCVKA
Sbjct: 301 HFEWAIGTDEGQSDVFGFEDVGMNVQVHRDGINLDQFEDYFITLRAWKLDGTYTELCVKA 360
Query: 361 HALKGQSCVHHRLVVGNGFVTITKGESIRSFFXXXXXXXXXXXXXXXXXXXXXXXXXXLH 420
HALKGQSCVHHRLVVGNGFVTITKGESIRSFF LH
Sbjct: 361 HALKGQSCVHHRLVVGNGFVTITKGESIRSFFEHAEEAEEEDEEDAMDRDGNDLDGDGLH 420
Query: 421 PQKHAKSPELAREFLLDAAAVIFKEQVEKAFREGTARQNAHSIFVSLALELLEERVHVAC 480
PQKHAKSPELAREFLLDAAAVIFKEQVEKAFREGTARQNAHSIFVSLALELLEERVHVAC
Sbjct: 421 PQKHAKSPELAREFLLDAAAVIFKEQVEKAFREGTARQNAHSIFVSLALELLEERVHVAC 480
Query: 481 KEIITLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILGLK 540
KEIITL ILGLK
Sbjct: 481 KEIITLEKQNKLLEEEEKEKQDEQERRMRRRTKEREKKHRRKERLKEKERDKGKEILGLK 540
Query: 541 SSDDNSCSTLRXXXXXXXXXXXXXXXRDSASEEEDNSTVVDLCSPDTFVDQTACREISVQ 600
SSDDNSCSTLR RDSASEEEDNSTVVDLCSPDTFVDQTACREISVQ
Sbjct: 541 SSDDNSCSTLRNSTSTNDESTNTPDSRDSASEEEDNSTVVDLCSPDTFVDQTACREISVQ 600
Query: 601 NNMDYCNTLTEFARTNSSDLFTSGQSKSSRWNLRLRKDFPQDQSSCCYDECGDENGSIGD 660
NNMDYCNTLTEFARTNSSDLFTSGQSKSSRWNLRLRKDFPQDQSSCCYDECGDENGSIGD
Sbjct: 601 NNMDYCNTLTEFARTNSSDLFTSGQSKSSRWNLRLRKDFPQDQSSCCYDECGDENGSIGD 660
Query: 661 FQWQSKERTRHSARSCNSVFTTNNRTRDRHNYISFSCDPRDDYVINDXXXXXXXXXXRET 720
FQWQSKERTRHSARSCNSVFTTNNRTRDRHNYISFSCDPRDDYVIND RET
Sbjct: 661 FQWQSKERTRHSARSCNSVFTTNNRTRDRHNYISFSCDPRDDYVINDSCSSSSTGSGRET 720
Query: 721 KMARKTGVERPRVQYRRCYPLDNFIVSKESRTGNTQQKNGAPKQVWEPMDSQKKNLLDNK 780
KMARKTGVERPRVQYRRCYPLDNFIVSKESRTGNTQQKNGAPKQVWEPMDSQKKNLLDNK
Sbjct: 721 KMARKTGVERPRVQYRRCYPLDNFIVSKESRTGNTQQKNGAPKQVWEPMDSQKKNLLDNK 780
Query: 781 NNGSGAVCNVDPTKLVEQDSSECPNFDAGHEPLSQSSERSRDICKSETDQPCENNEKNQA 840
NNGSGAVCNVDPTKLVEQDSSECPNFDAGHEPLSQSSERSRDICKSETDQPCENNEKNQA
Sbjct: 781 NNGSGAVCNVDPTKLVEQDSSECPNFDAGHEPLSQSSERSRDICKSETDQPCENNEKNQA 840
Query: 841 TSCGGTIMVDKQDCYSTKDEGSGHDEELMMNXXXXXXXXXXXXEADREXXXXXXXXXXAQ 900
TSCGGTIMVDKQDCYSTKDEGSGHDEELMMN EADRE AQ
Sbjct: 841 TSCGGTIMVDKQDCYSTKDEGSGHDEELMMNSTSSDGLSSCTSEADRESSTSSVTSLSAQ 900
Query: 901 HQXXXXXXXXXXXXRVNSIEEAPSTKTVSRSLLEACAGKGFREYQPKAMHRPHNDRLGFN 960
HQ RVNSIEEAPSTKTVSRSLLEACAGKGFREYQPKAMHRPHNDRLGFN
Sbjct: 901 HQESSSSDSEESPERVNSIEEAPSTKTVSRSLLEACAGKGFREYQPKAMHRPHNDRLGFN 960
Query: 961 IPPFQDQLLHHQSMHVPTHSSATMGLHNHPWAAPASGYMQYAQPSHFYSNPLGFGVPGKQ 1020
IPPFQDQLLHHQSMHVPTHSSATMGLHNHPWAAPASGYMQYAQPSHFYSNPLGFGVPGKQ
Sbjct: 961 IPPFQDQLLHHQSMHVPTHSSATMGLHNHPWAAPASGYMQYAQPSHFYSNPLGFGVPGKQ 1020
Query: 1021 SPDFPVQYSNVHHFPAPAFSYAPPEPIRKTTPSFRVMHTSPPYRNGLHQSQTVGHPHGDP 1080
SPDFPVQYSNVHHFPAPAFSYAPPEPIRKTTPSFRVMHTSPPYRNGLHQSQTVGHPHGDP
Sbjct: 1021 SPDFPVQYSNVHHFPAPAFSYAPPEPIRKTTPSFRVMHTSPPYRNGLHQSQTVGHPHGDP 1080
Query: 1081 TLERHPSQPKPLDLKDAPGENKSSPEGNASFSLFQFNLPIAPPAPPSSKDDTSGESATRT 1140
TLERHPSQPKPLDLKDAPGENKSSPEGNASFSLFQFNLPIAPPAPPSSKDDTSGESATRT
Sbjct: 1081 TLERHPSQPKPLDLKDAPGENKSSPEGNASFSLFQFNLPIAPPAPPSSKDDTSGESATRT 1140
Query: 1141 PLAQVQVQPCSREQTDVKEYNLFCSKNGSMFSFISR 1176
PLAQVQVQPCSREQTDVKEYNLFCSKNGSMFSFISR
Sbjct: 1141 PLAQVQVQPCSREQTDVKEYNLFCSKNGSMFSFISR 1176
>Os10g0105400 Conserved hypothetical protein
Length = 1168
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/469 (68%), Positives = 369/469 (78%), Gaps = 18/469 (3%)
Query: 18 IWSRRRDEITLDRLQKFWNGLPPQARQELLKLDKQTLIEQARKNLYCSRCNGLLLESFMQ 77
IWSRRRDEIT DRL KFW+ L PQAR ELL++DKQTLIE AR+NLYCSRCNGLLLESF Q
Sbjct: 33 IWSRRRDEITFDRLDKFWSALSPQARHELLRIDKQTLIEHARRNLYCSRCNGLLLESFTQ 92
Query: 78 IVMYGKTLQRDASDINRLNTTGETRIRQGEQEDPSVHPWGGLVATKDGILTLLDCFVNAK 137
+VM+GK LQ+ + Q+D WGGL TKDG+LTLLDCF+N
Sbjct: 93 MVMHGKLLQQKGPGV--------------VQDDS----WGGLSTTKDGLLTLLDCFINTN 134
Query: 138 SLRVLQNVFDNARAREREREMLYPDACGGSGRGWISQRLASYSRGYGTRETCALHTARLS 197
SL VLQN+FDNARAREREREMLYPDACGG RGWIS +A+Y RG+GTR+TCALHTARLS
Sbjct: 135 SLHVLQNIFDNARAREREREMLYPDACGGGERGWISPVIANYGRGHGTRDTCALHTARLS 194
Query: 198 CDTLVDFWSALSEETRLSLLRMKEEDFMERLMRRFESKRFCRDCRRNVIREFKELKELKR 257
CD LV +W L EETR SLLRM+EEDF+ERLM RF+SKRFCRDCRRNVIREFKELKELKR
Sbjct: 195 CDALVGYWFDLCEETRSSLLRMREEDFIERLMHRFDSKRFCRDCRRNVIREFKELKELKR 254
Query: 258 MRREPRCTSWFCVADTDFQCEVFEDAVIIDWRQTLSEADGSYHHFEWAIGTDEGQSDVFG 317
+RRE CTSWFC+ DT F+CEVFEDAV++D RQ+ + D SY+ FE+A+GT++G+SD+ G
Sbjct: 255 LRREHHCTSWFCITDTAFRCEVFEDAVLVDCRQSFLDQDKSYNRFEFAVGTEKGKSDILG 314
Query: 318 FEDVGMNVQVHRDGINLDQFEDYFITLRAWKLDGTYTELCVKAHALKGQSCVHHRLVVGN 377
FE VGMN QVHR G++LDQFEDYF+TLRA D T+ VKAHALKGQSCVH RL+VG+
Sbjct: 315 FEAVGMNGQVHRKGLDLDQFEDYFVTLRAHYADNKNTDFYVKAHALKGQSCVHRRLIVGD 374
Query: 378 GFVTITKGESIRSFFXXXXXXXXXXXXXXXXXXXXXXXXXXLHPQKHAKSPELAREFLLD 437
GFVTITKGESI+SFF +HPQKHAKSPELAREFLLD
Sbjct: 375 GFVTITKGESIQSFFEHAEEAEEEDEDDAMDRDGNDTDVDGVHPQKHAKSPELAREFLLD 434
Query: 438 AAAVIFKEQVEKAFREGTARQNAHSIFVSLALELLEERVHVACKEIITL 486
AAAVIFKEQVEK+ RE TA+QNAHS+FVSLAL+LLEERVHVACKEIITL
Sbjct: 435 AAAVIFKEQVEKSLREATAQQNAHSVFVSLALKLLEERVHVACKEIITL 483
Score = 439 bits (1128), Expect = e-123, Method: Compositional matrix adjust.
Identities = 263/623 (42%), Positives = 354/623 (56%), Gaps = 38/623 (6%)
Query: 569 SASEEEDNSTVV--DLCSPDTFVDQTACREISVQNNMDYCNTLTEFARTNSSDLFTSGQS 626
SAS++ED ++V + SPDT VDQ+ RE Q+N +C+T EF ++ + F QS
Sbjct: 567 SASDDEDKDSIVVTESFSPDTCVDQSLTRESDGQSNEFHCSTTLEFIPSDCNGSFMCEQS 626
Query: 627 KSSRWNLRLRKDFPQDQSSCC-YDECGDENGSIGDFQWQSKERTRHSARSCNSVFTTNNR 685
SSR LR R+D Q+Q++ Y++C D+ G +G+ WQS+ER R++ R CNS+F+ NNR
Sbjct: 627 TSSRRKLRFRRDSLQEQTTGFWYEDCQDDTGGVGNIHWQSRERARNAGRGCNSLFSANNR 686
Query: 686 TRDRHNYISFSCDPRDDYVINDXXXXXXXXXXRETKMARKTGVERPRVQYRRCYPLDNFI 745
TR+R+ Y + SC ++DY RE KM+RKT VE+P +QYRRCYPLD+FI
Sbjct: 687 TRERYEYNACSCGQQEDY----GYFSPTARSSREMKMSRKTMVEKPWLQYRRCYPLDSFI 742
Query: 746 VSKESRTGNTQQKNGAPKQVWEPMDSQKKNLLDNKNNGSGAVCNVDPTKLV--EQDSSEC 803
VSK SR G+T KN APKQVWEPMD++KK L + N S V VD + V +D C
Sbjct: 743 VSKGSRVGSTPNKNAAPKQVWEPMDARKKASLGSSNGSSETVSGVDRSNQVGCSKDIVNC 802
Query: 804 PN-FDAGHEPLSQSSERSRDICKSETDQPCENNEKNQATSCGGTIMVDKQDCYSTKDEGS 862
+ HE L+++ CKS TDQPCE++E NQA +V+K D TKD G
Sbjct: 803 SQILGSEHEELAEA-------CKSITDQPCESSENNQAACNSEPPVVNKPDSCFTKDGGQ 855
Query: 863 GHDEELMMNXXXXXXXXXXXXEADREXXXXXXXXXXAQH-QXXXXXXXXXXXXRVNSIEE 921
+ E DR+ AQ+ + R NS
Sbjct: 856 TAN-------MTSSDSSSCLSEGDRDSSMSSMTSLSAQNPESSSTSDSEGSSERNNSNPG 908
Query: 922 APSTKTVSRSLLEACAGKGFREYQPKAMHRPHNDRLGFNIPPFQDQLLHHQSMHVPTHSS 981
P TK SRSLLE CAG GFREYQP+ +H ++ GF + PFQ+QLLH Q +H + S
Sbjct: 909 NPPTKNGSRSLLEMCAGNGFREYQPQNIHPSDGNQFGFGVTPFQEQLLHQQKIHAAPYPS 968
Query: 982 ATMGLHNHPWAAPASGYMQYAQPSHFYSNPLGFGVPGKQSPDFPVQYSNVHHFPAPAFSY 1041
MG HNH + P +GY+ Y QP HFY N +G+GV G Q DFP+QYSNVH + P F Y
Sbjct: 969 TLMGFHNHHMSVPTNGYLAYPQPGHFYPNAVGYGVAGNQCVDFPMQYSNVHPYAGPEFGY 1028
Query: 1042 APPEPIRKTTPSFRVM-HTSPPYRNGLHQ--SQTVGHPHGDPTLERH--PSQPKPLDLKD 1096
P +P+ KT +F M T+ +RNG + + + P RH P +PK +D
Sbjct: 1029 VPAQPVHKTPVNFNAMVPTAALFRNGAPEVINPVIVKPDRQ---HRHTLPPEPKRVDPDP 1085
Query: 1097 APG---ENKSSPEGNASFSLFQFNLPIAPPAPPSSKDDTSGES-ATRTPLAQVQ-VQPCS 1151
G +NK +G+ FSLF FNLPI+ PA SS+D+ SG A+R+P Q QPCS
Sbjct: 1086 QNGCSEDNKKPQDGSVPFSLFHFNLPISSPAQASSEDEVSGGCLASRSPTPSAQKAQPCS 1145
Query: 1152 REQTDVKEYNLFCSKNGSMFSFI 1174
RE+T++KEYNLF ++ G F F
Sbjct: 1146 REETNIKEYNLFSARTGVEFPFF 1168
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 38,451,728
Number of extensions: 1678124
Number of successful extensions: 5141
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 5131
Number of HSP's successfully gapped: 4
Length of query: 1176
Length of database: 17,035,801
Length adjustment: 112
Effective length of query: 1064
Effective length of database: 11,187,833
Effective search space: 11903854312
Effective search space used: 11903854312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 162 (67.0 bits)