BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0214200 Os03g0214200|AK100623
         (401 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0214200  Protein of unknown function DUF1675 family pro...   710   0.0  
Os03g0419100  Protein of unknown function DUF1675 family pro...   133   2e-31

>Os03g0214200 Protein of unknown function DUF1675 family protein
          Length = 401

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/401 (88%), Positives = 356/401 (88%)

Query: 1   MEGFSRDLLCGIGKGGDGPRGEVRPRVDMEAEEVELNLGLSLGGRFGLDRRGEKLARSSS 60
           MEGFSRDLLCGIGKGGDGPRGEVRPRVDMEAEEVELNLGLSLGGRFGLDRRGEKLARSSS
Sbjct: 1   MEGFSRDLLCGIGKGGDGPRGEVRPRVDMEAEEVELNLGLSLGGRFGLDRRGEKLARSSS 60

Query: 61  VAAILAAPTEPSAPPSGLFRTSSLPTVAAAEAAKKQGVDELNCRXXXXXXXXXXXXXXXX 120
           VAAILAAPTEPSAPPSGLFRTSSLPTVAAAEAAKKQGVDELNCR                
Sbjct: 61  VAAILAAPTEPSAPPSGLFRTSSLPTVAAAEAAKKQGVDELNCRRPSGGAEAEPAAARLP 120

Query: 121 XXXXXXXXXXXXXXXXLEVNMTDTLMRTSSLPAGIEDEWRKRKEAQSLKRLEVKRKRIER 180
                           LEVNMTDTLMRTSSLPAGIEDEWRKRKEAQSLKRLEVKRKRIER
Sbjct: 121 ASGSPSSGSSDGEGRRLEVNMTDTLMRTSSLPAGIEDEWRKRKEAQSLKRLEVKRKRIER 180

Query: 181 RNSLTSNISKEAVGQILEEMNAGAEKVESCDDVATGNKKTGGNVNHSSDRNRCTGLPPVH 240
           RNSLTSNISKEAVGQILEEMNAGAEKVESCDDVATGNKKTGGNVNHSSDRNRCTGLPPVH
Sbjct: 181 RNSLTSNISKEAVGQILEEMNAGAEKVESCDDVATGNKKTGGNVNHSSDRNRCTGLPPVH 240

Query: 241 RATYTQQRGSLSGIPTKHIPAMKGSADAEEHNVPSAATEHRNGAAIATPPFXXXXXXXXX 300
           RATYTQQRGSLSGIPTKHIPAMKGSADAEEHNVPSAATEHRNGAAIATPPF         
Sbjct: 241 RATYTQQRGSLSGIPTKHIPAMKGSADAEEHNVPSAATEHRNGAAIATPPFSALAVRAVA 300

Query: 301 XXXXGEQLRATGRVAARAKSMGDVERIMMQEMPCVCTKGLPNGKRVEGFLYKYRKGEEVR 360
               GEQLRATGRVAARAKSMGDVERIMMQEMPCVCTKGLPNGKRVEGFLYKYRKGEEVR
Sbjct: 301 LASRGEQLRATGRVAARAKSMGDVERIMMQEMPCVCTKGLPNGKRVEGFLYKYRKGEEVR 360

Query: 361 IVCVCHGSFLTPAEFVKHAGGGDVANPLRHIVVNPIPPSLY 401
           IVCVCHGSFLTPAEFVKHAGGGDVANPLRHIVVNPIPPSLY
Sbjct: 361 IVCVCHGSFLTPAEFVKHAGGGDVANPLRHIVVNPIPPSLY 401



>Os03g0419100 Protein of unknown function DUF1675 family protein
          Length = 307

 Score =  133 bits (334), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/151 (46%), Positives = 89/151 (58%), Gaps = 4/151 (2%)

Query: 248 RGSLSGIPTKHIPAMKGSADAEEHNVPSAATEHRNGAAIATPPFXXXXXXXXXXXXXGEQ 307
           +GS S  P    P       + E   PS + +    +A+  PP                 
Sbjct: 156 QGSSSANPQDQGPDGSAICQSTEARSPSTSDDTNQNSAL--PPTASTGKPLNGTVTQQSP 213

Query: 308 LRATGRVAARAKSMGDVERIMMQEMPCVCTKGL-PNGKRVEGFLYKYRKGEEVRIVCVCH 366
           LR  G +  R  S GD+ +IMM +MP V +K   PNG++++GFLYKYRKGE+V I+CVCH
Sbjct: 214 LRTLGSLTMRTSSTGDIGKIMM-DMPMVSSKVEGPNGRKIDGFLYKYRKGEDVSIMCVCH 272

Query: 367 GSFLTPAEFVKHAGGGDVANPLRHIVVNPIP 397
           G F +PAEFVKHAGGGDV+NPLRHIVVNP P
Sbjct: 273 GKFHSPAEFVKHAGGGDVSNPLRHIVVNPSP 303



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.132    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,800,525
Number of extensions: 582771
Number of successful extensions: 1762
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1760
Number of HSP's successfully gapped: 2
Length of query: 401
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 298
Effective length of database: 11,657,759
Effective search space: 3474012182
Effective search space used: 3474012182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)