Os03g0419100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1675 family protein.
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Os03g0419100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1675 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.83 | 0.289 | 12.9 | 0.639 | 1.14 | 0.793 | 0.00161 | 0.486 | 0.163 | 3.74 | 23.4 | 2405 | -- | -- |
| 38.23 | 0.288 | 12.9 | 0.823 | 1.14 | 0.809 | -0.0346 | -- | 0.217 | 3.74 | 23.39 | 2403 | -- | -- |
| 37.83 | 0.286 | 12.9 | 0.639 | 1.14 | 0.793 | -- | 0.488 | 0.163 | 3.74 | 23.39 | 2403 | -- | -- |
| 38.24 | 0.288 | 12.9 | 0.824 | 1.14 | 0.809 | -- | -- | 0.217 | 3.75 | 23.36 | 2403 | -- | -- |
| 104.03 | 0.478 | 12.9 | 0.652 | -- | 0.533 | -- | 0.283 | 0.0758 | -- | 23.39 | 2403 | -- | -- |
| 63.68 | 0.374 | 13 | 0.48 | 1.08 | -- | -0.0734 | -- | -0.141 | 4.03 | -- | -- | -- | -- |
| 63.69 | 0.374 | 13 | 0.481 | 1.08 | -- | -- | -- | -0.14 | 4.03 | -- | -- | -- | -- |
| 91.11 | 0.446 | 12.9 | 0.692 | -- | 0.618 | -- | -- | 0.197 | -- | 24.7 | 1782 | -- | -- |
| 54.22 | 0.343 | 12.9 | -- | 1.12 | 0.604 | -- | -- | 0.0337 | 3.77 | 23.37 | 2403 | -- | -- |
| 126.69 | 0.526 | 13 | 0.525 | -- | -- | -- | -- | -0.111 | -- | -- | -- | -- | -- |
| 69.79 | 0.391 | 13 | -- | 1.08 | -- | -- | -- | -0.194 | 4.03 | -- | -- | -- | -- |
| 91.48 | 0.447 | 13 | -- | -- | 0.636 | -- | -- | 0.00159 | -- | 25.9 | 1823 | -- | -- |
| 133.96 | 0.54 | 13 | -- | -- | -- | -- | -- | -0.17 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.50 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 3 | 36.83 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 11 | 37.19 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 18 | 37.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 28 | 37.47 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 68 | 37.83 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 16 |
| 89 | 37.95 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 93 | 37.99 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 96 | 38.00 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 114 | 38.06 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 128 | 38.13 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 134 | 38.14 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 175 | 38.24 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 4 |
| 187 | 38.27 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 209 | 38.31 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 225 | 38.33 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 9 |
| 233 | 38.34 | temperature | 20 | 1440 | > th | dose dependent | sin | 9 | NA |
| 234 | 38.34 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 236 | 38.34 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 437 | 38.58 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 555 | 38.70 | temperature | 30 | 1440 | < th | dose dependent | sin | 14 | NA |
| 677 | 38.81 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 5 |
| 690 | 38.82 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 23 |
| 734 | 38.86 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 5 |