BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0210400 Os03g0210400|AK065966
         (789 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0210400  Protein prenyltransferase domain containing pr...  1315   0.0  
Os08g0379000  Protein prenyltransferase domain containing pr...   337   2e-92

>Os03g0210400 Protein prenyltransferase domain containing protein
          Length = 789

 Score = 1315 bits (3404), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 645/723 (89%), Positives = 645/723 (89%)

Query: 1   MEQDQGVXXXXXSENPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPDANVYSQNPSSVP 60
           MEQDQGV     SENP                             NPDANVYSQNPSSVP
Sbjct: 1   MEQDQGVAAAAASENPSAGQGAHDSGSAGAGAAASSIASFDSATANPDANVYSQNPSSVP 60

Query: 61  QADGAQGADASVYPADHAPLNGTSGQVVDYQSXXXXXXXXXXXXXXXPVPEQSYADAVLS 120
           QADGAQGADASVYPADHAPLNGTSGQVVDYQS               PVPEQSYADAVLS
Sbjct: 61  QADGAQGADASVYPADHAPLNGTSGQVVDYQSAGAAENGAATNEMGEPVPEQSYADAVLS 120

Query: 121 AEEARLWNAVTANCLDFNAWTALIDETEKTAESNILKLRKVYDAFLAEFPLCFGYWKKYA 180
           AEEARLWNAVTANCLDFNAWTALIDETEKTAESNILKLRKVYDAFLAEFPLCFGYWKKYA
Sbjct: 121 AEEARLWNAVTANCLDFNAWTALIDETEKTAESNILKLRKVYDAFLAEFPLCFGYWKKYA 180

Query: 181 DHEARLDGVTKVIEVYERAVLAVTYSVDIWYNYCQFAISTYEDPDIIRRLFERGLAYVGT 240
           DHEARLDGVTKVIEVYERAVLAVTYSVDIWYNYCQFAISTYEDPDIIRRLFERGLAYVGT
Sbjct: 181 DHEARLDGVTKVIEVYERAVLAVTYSVDIWYNYCQFAISTYEDPDIIRRLFERGLAYVGT 240

Query: 241 DYRSNILWDEYIKYEESLQAWSHLAIIYTRILEHPITQLDRYFHCLKELAATRSLSEILT 300
           DYRSNILWDEYIKYEESLQAWSHLAIIYTRILEHPITQLDRYFHCLKELAATRSLSEILT
Sbjct: 241 DYRSNILWDEYIKYEESLQAWSHLAIIYTRILEHPITQLDRYFHCLKELAATRSLSEILT 300

Query: 301 SEEAAMYSVTAENTAQTLDGETQPGDVDMSAQPEISGSTEADNLAKYVSVREEMYNKAKE 360
           SEEAAMYSVTAENTAQTLDGETQPGDVDMSAQPEISGSTEADNLAKYVSVREEMYNKAKE
Sbjct: 301 SEEAAMYSVTAENTAQTLDGETQPGDVDMSAQPEISGSTEADNLAKYVSVREEMYNKAKE 360

Query: 361 YESKIIGFELAIRRPYFHVKPLDNPELENWHNYLDLIEKEEDINKVIKLYERCVIACASY 420
           YESKIIGFELAIRRPYFHVKPLDNPELENWHNYLDLIEKEEDINKVIKLYERCVIACASY
Sbjct: 361 YESKIIGFELAIRRPYFHVKPLDNPELENWHNYLDLIEKEEDINKVIKLYERCVIACASY 420

Query: 421 SEFWIRYVLCMEARGSIELANNALARATHVFVKKQAEIHLFSARFKELSGDVSGARVEYQ 480
           SEFWIRYVLCMEARGSIELANNALARATHVFVKKQAEIHLFSARFKELSGDVSGARVEYQ
Sbjct: 421 SEFWIRYVLCMEARGSIELANNALARATHVFVKKQAEIHLFSARFKELSGDVSGARVEYQ 480

Query: 481 HLYSDLYPGLLEAIVKHSNMEHRLGDKESACSIYEKAIAAEKEKDRSQILPTLLIQYSRF 540
           HLYSDLYPGLLEAIVKHSNMEHRLGDKESACSIYEKAIAAEKEKDRSQILPTLLIQYSRF
Sbjct: 481 HLYSDLYPGLLEAIVKHSNMEHRLGDKESACSIYEKAIAAEKEKDRSQILPTLLIQYSRF 540

Query: 541 LSLAIGDIEKAKETLTGFLEQCDLTKSIIEAIMQLESILPSEKRIEFLDSLVEKFLTAEP 600
           LSLAIGDIEKAKETLTGFLEQCDLTKSIIEAIMQLESILPSEKRIEFLDSLVEKFLTAEP
Sbjct: 541 LSLAIGDIEKAKETLTGFLEQCDLTKSIIEAIMQLESILPSEKRIEFLDSLVEKFLTAEP 600

Query: 601 TEGEVTSLADKEDISSIFLEFLDLFGDAQAIKKATNRHLTHFXXXXXXXXXXXXXADDVI 660
           TEGEVTSLADKEDISSIFLEFLDLFGDAQAIKKATNRHLTHF             ADDVI
Sbjct: 601 TEGEVTSLADKEDISSIFLEFLDLFGDAQAIKKATNRHLTHFSRKRSMLSSKKRRADDVI 660

Query: 661 MSDRDKLARIGDGTQPVVGTDPNAHNPPVWPATSEASGQQWXXXXXXXXXXXXXXXXDYS 720
           MSDRDKLARIGDGTQPVVGTDPNAHNPPVWPATSEASGQQW                DYS
Sbjct: 661 MSDRDKLARIGDGTQPVVGTDPNAHNPPVWPATSEASGQQWGAAYAPQATYPAYGTYDYS 720

Query: 721 HQM 723
           HQM
Sbjct: 721 HQM 723



>Os08g0379000 Protein prenyltransferase domain containing protein
          Length = 1161

 Score =  337 bits (864), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 198/518 (38%), Positives = 289/518 (55%), Gaps = 44/518 (8%)

Query: 132 ANCLDFNAWTALIDETEKTAESNILKLRKVYDAFLAEFPLCFGYWKKYADHEARLDGVTK 191
           +N  DF+AW +LI   E+T+                           YA H+ARL    +
Sbjct: 34  SNRHDFDAWVSLIKAAEETS--------------------------MYAAHKARLCTNKQ 67

Query: 192 VIEVYERAVLAVTYSVDIWYNYCQFAISTYEDPDIIRRLFERGLAYVGTDYRSNILWDEY 251
           V EVYE+AV AV +S+D+W +YC FA+ TYE+P  IRRLFER L+ VG DY    LWD+Y
Sbjct: 68  VEEVYEQAVQAVPHSIDLWVSYCGFAMCTYEEPAHIRRLFERALSLVGKDYLCYHLWDKY 127

Query: 252 IKYEESLQAWSHLAIIYTRILEHPITQLDRYFHCLKELAATRSLSEILTSEEAAMYSVTA 311
           I++E+S +    LA IY   L+ P  +L RY+   ++L         L   EAA    ++
Sbjct: 128 IEFEKSQKQLIQLATIYIDTLKFPTKKLRRYYESFRKLVT-------LMEHEAAGAERSS 180

Query: 312 EN--TAQTLDGETQPGDVDMSAQ-----PEISGSTEADNLAKYVSVREEMYNKAKEYESK 364
           EN  T + +  E    +VD S +      E SG   AD + +Y+   E +Y ++ + + +
Sbjct: 181 ENLRTLEVIKAED--SEVDASIKISALLDEHSGHLRADAVKQYLLSGESLYQRSSKIDKE 238

Query: 365 IIGFELAIRRPYFHVKPLDNPELENWHNYLDLIEKEEDINKVIKLYERCVIACASYSEFW 424
           I  FE +I+RP+FHVKPLD+ +LENWH YLD +EK+ D +  +KLYERC+I CA+YSEFW
Sbjct: 239 ISCFEASIKRPFFHVKPLDDDQLENWHRYLDFVEKKGDFDWAVKLYERCLIPCANYSEFW 298

Query: 425 IRYVLCMEARGSIELANNALARATHVFVKKQAEIHLFSARFKELSGDVSGARVEYQHLYS 484
           IRY   ++A+G  E+A+ AL RA+  FVK     H++ A FKE  GD  GAR  +    +
Sbjct: 299 IRYAEFVDAKGGREIASYALGRASSYFVKGVPTFHMYYAMFKEQIGDAQGARSLFIEGSN 358

Query: 485 DLYPGLLEAIVKHSNMEHRLGDKESACSIYEKAIAAEKEKDRSQILPTLLIQYSRFLSLA 544
           +L       I + +NME R+G+ ++A  IYE AI    +K+  +ILP L   +++F    
Sbjct: 359 NLTSNFCANINRLANMEKRMGNTKAASEIYETAIQDAMQKN-VKILPDLYTNFAQFKYAV 417

Query: 545 IGDIEKAKETLTGFLEQCDLTKSIIEAIMQLESILPSEKRIEFLDSLVEKFLTAEPTEGE 604
             +I +AKE     ++Q    K++I+  MQ  S       I  LDS++   +        
Sbjct: 418 NHNISEAKEVFVEGIKQAPC-KALIKGFMQFMSTHGGPTEIPILDSVISNAVVPGSDIST 476

Query: 605 VTSLADKEDISSIFLEFLDLFGDAQAIKKATNRHLTHF 642
           V S  D+EDIS +FLEF+DL+GD + ++KA  RH   F
Sbjct: 477 VLSREDREDISLLFLEFVDLYGDVRDLRKAWARHSKLF 514



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,041,509
Number of extensions: 797641
Number of successful extensions: 2038
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2029
Number of HSP's successfully gapped: 2
Length of query: 789
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 680
Effective length of database: 11,344,475
Effective search space: 7714243000
Effective search space used: 7714243000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 160 (66.2 bits)