Os08g0379000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os08g0379000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.77 | 0.289 | 10.5 | 1.01 | 0.762 | -0.552 | -0.506 | 2.5 | 0.504 | 16.8 | 22.38 | 1115 | -- | -- |
| 41.24 | 0.299 | 10.6 | 0.578 | 0.778 | -0.498 | -0.647 | -- | 0.417 | 16.3 | 13.76 | 10390 | -- | -- |
| 38.42 | 0.289 | 10.5 | 1.02 | 0.756 | -0.556 | -- | 2.56 | 0.506 | 16.8 | 22.47 | 1134 | -- | -- |
| 42.22 | 0.303 | 10.6 | 0.521 | 0.772 | -0.496 | -- | -- | 0.403 | 16.5 | 13.5 | 10515 | -- | -- |
| 67.44 | 0.382 | 10.5 | 1.03 | -- | -0.72 | -- | 2.6 | 0.465 | -- | 23.97 | 1218 | -- | -- |
| 45.09 | 0.315 | 10.6 | 0.223 | 0.79 | -- | -0.642 | -- | 0.243 | 16.4 | -- | -- | -- | -- |
| 46.19 | 0.318 | 10.6 | 0.217 | 0.788 | -- | -- | -- | 0.239 | 16.5 | -- | -- | -- | -- |
| 72.35 | 0.398 | 10.6 | 0.107 | -- | 0.53 | -- | -- | 0.159 | -- | 23.97 | 1218 | -- | -- |
| 45.39 | 0.314 | 10.6 | -- | 0.767 | -0.23 | -- | -- | 0.218 | 16.5 | 25.92 | 2677 | -- | -- |
| 79.43 | 0.416 | 10.6 | 0.186 | -- | -- | -- | -- | 0.218 | -- | -- | -- | -- | -- |
| 47.44 | 0.322 | 10.6 | -- | 0.784 | -- | -- | -- | 0.215 | 16.5 | -- | -- | -- | -- |
| 72.26 | 0.397 | 10.6 | -- | -- | 0.569 | -- | -- | 0.161 | -- | 24.78 | 2686 | -- | -- |
| 80.35 | 0.418 | 10.6 | -- | -- | -- | -- | -- | 0.198 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.23 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 13 | 18 |
| 9 | 37.52 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 11 | 37.57 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 4 |
| 12 | 37.57 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 15 | 37.59 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 21 |
| 16 | 37.62 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 2 |
| 17 | 37.62 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 20 | 37.66 | wind | 5.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 21 | 37.67 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 4 |
| 29 | 37.74 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 6 |
| 32 | 37.76 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 20 |
| 33 | 37.78 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 35 | 37.79 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 6 |
| 36 | 37.79 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 37 | 37.83 | radiation | 10.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 38 | 37.86 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 16 | 16 |
| 39 | 37.87 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 43 | 37.89 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 22 |
| 44 | 37.89 | wind | 9.0 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 47 | 37.91 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 49 | 37.92 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 50 | 37.92 | wind | 5.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 53 | 37.94 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 13 |
| 55 | 37.95 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 13 |
| 56 | 37.95 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 58 | 37.96 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 60 | 37.96 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 62 | 37.96 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 12 |
| 64 | 37.96 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 18 |
| 73 | 37.98 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 75 | 37.98 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 76 | 37.98 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 79 | 37.98 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 81 | 37.98 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 85 | 37.98 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 93 | 37.99 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 9 |
| 112 | 38.02 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 12 | 6 |
| 115 | 38.02 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 118 | 38.02 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 127 | 38.04 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 138 | 38.05 | radiation | 1.0 | 270 | < th | dose independent | rect. | 5 | 21 |
| 151 | 38.07 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 158 | 38.08 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 180 | 38.10 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 3 |
| 198 | 38.11 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 15 | NA |
| 217 | 38.13 | humidity | 70.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 227 | 38.14 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 228 | 38.14 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 239 | 38.15 | wind | 9.0 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 249 | 38.16 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 251 | 38.16 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 252 | 38.16 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 254 | 38.16 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 260 | 38.16 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 264 | 38.17 | wind | 3.0 | 43200 | > th | dose independent | sin | 2 | NA |
| 266 | 38.17 | wind | 3.0 | 43200 | < th | dose independent | sin | 3 | NA |
| 288 | 38.19 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 290 | 38.19 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 291 | 38.19 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 294 | 38.19 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 295 | 38.19 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 297 | 38.19 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 308 | 38.19 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 22 |
| 309 | 38.19 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 320 | 38.20 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 326 | 38.21 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 329 | 38.21 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 23 | 6 |
| 357 | 38.24 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 363 | 38.24 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 4 | 12 |
| 376 | 38.25 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 3 | 14 |
| 380 | 38.26 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 387 | 38.26 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 405 | 38.27 | wind | 7.0 | 10 | < th | dose dependent | rect. | 3 | 6 |
| 411 | 38.28 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 466 | 38.31 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 24 | 6 |
| 475 | 38.31 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 15 | 11 |
| 477 | 38.31 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 13 | 13 |
| 493 | 38.32 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 19 | 3 |
| 512 | 38.34 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 526 | 38.34 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 545 | 38.36 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 585 | 38.39 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 3 | 6 |
| 594 | 38.39 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 3 | 6 |
| 606 | 38.41 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 655 | 38.42 | wind | 3.0 | 10 | < th | dose independent | rect. | 3 | 6 |
| 659 | 38.42 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 15 |
| 661 | 38.42 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 673 | 38.42 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 697 | 38.43 | wind | 5.0 | 43200 | < th | dose dependent | sin | 2 | NA |
| 698 | 38.43 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 733 | 38.45 | wind | 3.0 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 752 | 38.45 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 13 |
| 792 | 38.47 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 7 | 5 |
| 796 | 38.47 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 11 |
| 893 | 38.52 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 897 | 38.52 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 3 | 5 |
| 900 | 38.52 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 1 | 9 |
| 913 | 38.53 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 917 | 38.53 | radiation | 1.0 | 270 | < th | dose independent | rect. | 16 | 10 |
| 921 | 38.53 | radiation | 1.0 | 270 | < th | dose independent | rect. | 13 | 13 |
| 942 | 38.54 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 948 | 38.54 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 12 | 9 |
| 970 | 38.55 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 16 |
| 989 | 38.55 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 993 | 38.56 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 1 |