Os03g0210400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os03g0210400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.48 | 0.223 | 11.7 | 0.681 | 0.282 | -0.747 | 0.0919 | 0.679 | 0.331 | 17.4 | 19.15 | 358 | -- | -- |
| 22.65 | 0.222 | 11.7 | 0.552 | 0.26 | -0.774 | 0.217 | -- | 0.292 | 17.8 | 16.89 | 412 | -- | -- |
| 22.39 | 0.22 | 11.7 | 0.697 | 0.293 | -0.743 | -- | 0.854 | 0.333 | 17.7 | 20.28 | 403 | -- | -- |
| 22.82 | 0.222 | 11.7 | 0.564 | 0.261 | -0.795 | -- | -- | 0.294 | 17.8 | 16.23 | 413 | -- | -- |
| 22.97 | 0.223 | 11.7 | 0.694 | -- | -0.516 | -- | 0.554 | 0.309 | -- | 21.92 | 1624 | -- | -- |
| 31.09 | 0.261 | 11.8 | 0.38 | 0.0117 | -- | 0.11 | -- | 0.168 | 19 | -- | -- | -- | -- |
| 31.11 | 0.261 | 11.8 | 0.378 | 0.019 | -- | -- | -- | 0.169 | 15.8 | -- | -- | -- | -- |
| 23.29 | 0.225 | 11.7 | 0.549 | -- | -0.483 | -- | -- | 0.277 | -- | 21.9 | 1632 | -- | -- |
| 30.18 | 0.256 | 11.8 | -- | 0.222 | -0.513 | -- | -- | 0.186 | 18.2 | 19.94 | 386 | -- | -- |
| 31.13 | 0.261 | 11.8 | 0.377 | -- | -- | -- | -- | 0.169 | -- | -- | -- | -- | -- |
| 34.88 | 0.276 | 11.8 | -- | 0.0116 | -- | -- | -- | 0.127 | 16.2 | -- | -- | -- | -- |
| 30.49 | 0.257 | 11.8 | -- | -- | -0.338 | -- | -- | 0.182 | -- | 23.07 | 1631 | -- | -- |
| 34.89 | 0.276 | 11.8 | -- | -- | -- | -- | -- | 0.127 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.36 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 6 | 22.46 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 8 | 22.47 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 8 |
| 10 | 22.49 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 10 |
| 16 | 22.55 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 17 | 22.57 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 21 | 22.59 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 22 | 22.59 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 23 | 22.60 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 32 | 22.62 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 36 | 22.65 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 8 |
| 46 | 22.69 | temperature | 20.0 | 270 | > th | dose dependent | no | NA | NA |
| 47 | 22.69 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 12 | 7 |
| 73 | 22.78 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 90 | 22.84 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 94 | 22.84 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 104 | 22.86 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 122 | 22.89 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 8 |
| 154 | 22.91 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 157 | 22.92 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 173 | 22.93 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 175 | 22.93 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 17 | NA |
| 189 | 22.94 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 212 | 22.95 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 219 | 22.96 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 239 | 22.99 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 283 | 23.02 | temperature | 20.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 285 | 23.02 | temperature | 10.0 | 270 | > th | dose dependent | no | NA | NA |
| 355 | 23.07 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 383 | 23.09 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 12 |
| 385 | 23.09 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 451 | 23.14 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 12 | 10 |
| 621 | 23.21 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 4 | 20 |
| 676 | 23.23 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 678 | 23.23 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 802 | 23.27 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 817 | 23.27 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 945 | 23.32 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 5 | NA |