BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0209000 Os03g0209000|AK107769
         (155 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0209000  Similar to MFP1 attachment factor 1                 118   2e-27
Os10g0337700  Similar to MFP1 attachment factor 1                  67   4e-12

>Os03g0209000 Similar to MFP1 attachment factor 1
          Length = 155

 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 74/155 (47%)

Query: 1   MATDELHSXXXXXXXXXXXXXXXXXXQGFSFSIWPPTQRTRDAVVRRLVDTLGGDTILCK 60
           MATDELHS                  QGFSFSIWPPTQRTRDAVVRRLVDTLGGDTILCK
Sbjct: 1   MATDELHSAGAPAGVAAAEEGEGEAAQGFSFSIWPPTQRTRDAVVRRLVDTLGGDTILCK 60

Query: 61  RYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIKALQLYSKEVSRRLLDFVK 120
           RY                                      IKALQLYSKEVSRRLLDFVK
Sbjct: 61  RYGAVPAADAEPAARGIEAEAFDAAAASGEAAATASVEEGIKALQLYSKEVSRRLLDFVK 120

Query: 121 SRXXXXXXXXXXXXXXXXXXXXXXXXXVVDPQPAE 155
           SR                         VVDPQPAE
Sbjct: 121 SRSAAAAAAAAAAPPEGEAPAAPSESEVVDPQPAE 155



>Os10g0337700 Similar to MFP1 attachment factor 1
          Length = 140

 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 29  FSFSIWPPTQRTRDAVVRRLVDTLGGDTI--LCKRYXXXXXXXXXXXXXXXXXXXXXXXX 86
           FSF++WPPT+RTRDAVVRRLV  L GDT   L KRY                        
Sbjct: 28  FSFAVWPPTRRTRDAVVRRLVAVLSGDTTTALRKRYRYGAVPAADAERAARAVEAQAFDA 87

Query: 87  XXXXXXXXXXXXXXIKALQLYSKEVSRRLLDFVKSR 122
                         I+ LQLYS+EVS RLL FV+SR
Sbjct: 88  ASASSSSSSSVEDGIETLQLYSREVSNRLLAFVRSR 123



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,476,831
Number of extensions: 38664
Number of successful extensions: 50
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 2
Length of query: 155
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 63
Effective length of database: 12,232,113
Effective search space: 770623119
Effective search space used: 770623119
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 151 (62.8 bits)