Os03g0209000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to MFP1 attachment factor 1.
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Os03g0209000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to MFP1 attachment factor 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.58 | 0.26 | 13 | -0.223 | 0.346 | -0.256 | -0.607 | 1.01 | -0.13 | 19.9 | 20.8 | 945 | -- | -- |
| 33.01 | 0.268 | 13 | -0.327 | 0.336 | -0.396 | -0.397 | -- | -0.132 | 19.5 | 20.3 | 2531 | -- | -- |
| 31.23 | 0.26 | 13 | -0.152 | 0.321 | -0.23 | -- | 1.09 | -0.111 | 19.8 | 20.7 | 2581 | -- | -- |
| 32.55 | 0.266 | 13 | -0.284 | 0.329 | -0.52 | -- | -- | -0.137 | 19.9 | 18.4 | 2413 | -- | -- |
| 36.76 | 0.282 | 13 | -0.126 | -- | -0.234 | -- | 1.21 | -0.0989 | -- | 20.4 | 2700 | -- | -- |
| 36.75 | 0.284 | 13.1 | -0.568 | 0.328 | -- | -0.446 | -- | -0.261 | 19.3 | -- | -- | -- | -- |
| 37.26 | 0.286 | 13.1 | -0.559 | 0.326 | -- | -- | -- | -0.262 | 19.5 | -- | -- | -- | -- |
| 37.8 | 0.286 | 13 | -0.321 | -- | -0.584 | -- | -- | -0.173 | -- | 18.31 | 2663 | -- | -- |
| 33.61 | 0.27 | 13 | -- | 0.342 | -0.553 | -- | -- | -0.127 | 19.6 | 18.8 | 21363 | -- | -- |
| 42.95 | 0.306 | 13.1 | -0.564 | -- | -- | -- | -- | -0.267 | -- | -- | -- | -- | -- |
| 45.49 | 0.315 | 13.1 | -- | 0.332 | -- | -- | -- | -0.2 | 19.3 | -- | -- | -- | -- |
| 39.09 | 0.291 | 13 | -- | -- | -0.564 | -- | -- | -0.122 | -- | 17.6 | 22861 | -- | -- |
| 51.33 | 0.334 | 13 | -- | -- | -- | -- | -- | -0.205 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.46 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 2 | 28.49 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 18 | 28.92 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 48 | 29.40 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 54 | 29.43 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 55 | 29.45 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 81 | 29.61 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 5 |
| 147 | 29.94 | temperature | 20 | 270 | > th | dose dependent | sin | 0 | NA |
| 158 | 29.98 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 16 |
| 164 | 30.01 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 174 | 30.01 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 205 | 30.10 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 21 |
| 217 | 30.12 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 22 |
| 219 | 30.12 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 22 |
| 232 | 30.14 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 233 | 30.14 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 12 |
| 238 | 30.14 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 239 | 30.14 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 23 |
| 253 | 30.15 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 23 |
| 254 | 30.15 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 258 | 30.15 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 23 |
| 259 | 30.16 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 296 | 30.19 | humidity | 90 | 14400 | > th | dose dependent | sin | 15 | NA |
| 324 | 30.21 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 326 | 30.21 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 16 |
| 334 | 30.22 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 3 |
| 335 | 30.22 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 14 |
| 381 | 30.26 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 8 |
| 396 | 30.27 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 12 |
| 418 | 30.29 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 428 | 30.30 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 453 | 30.32 | humidity | 90 | 14400 | > th | dose dependent | sin | 3 | NA |
| 456 | 30.32 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 13 |
| 498 | 30.36 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 504 | 30.36 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 11 |
| 574 | 30.43 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 17 |
| 576 | 30.43 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 592 | 30.45 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 12 |
| 686 | 30.54 | temperature | 20 | 720 | > th | dose independent | sin | 6 | NA |
| 688 | 30.54 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 17 |
| 694 | 30.54 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 17 |
| 741 | 30.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 743 | 30.57 | humidity | 90 | 14400 | > th | dose independent | rect. | 15 | 19 |
| 755 | 30.58 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 762 | 30.58 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 22 |
| 764 | 30.58 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 856 | 30.63 | temperature | 20 | 720 | < th | dose independent | sin | 6 | NA |
| 859 | 30.63 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 860 | 30.63 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 10 |
| 898 | 30.65 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 913 | 30.66 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 920 | 30.66 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 23 |
| 921 | 30.66 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 23 |
| 922 | 30.66 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 23 |
| 953 | 30.67 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 13 |
| 962 | 30.68 | humidity | 90 | 14400 | > th | dose independent | sin | 15 | NA |
| 966 | 30.68 | humidity | 90 | 14400 | > th | dose independent | rect. | 15 | 10 |
| 996 | 30.69 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 10 |