BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0209000 Os03g0209000|AK107769
         (155 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G47200.1  | chr1:17298181-17298723 REVERSE LENGTH=181           68   2e-12
AT5G43070.1  | chr5:17289259-17289726 REVERSE LENGTH=156           58   2e-09

>AT1G47200.1 | chr1:17298181-17298723 REVERSE LENGTH=181
          Length = 180

 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 28  GFSFSIWPPTQRTRDAVVRRLVDTLGGDTILCKRYXXXXXXXXXXXXXXXXXXXXXXXXX 87
           G S  IWPPTQ+TRDAV+ RL++TL  ++IL KRY                         
Sbjct: 55  GISLRIWPPTQKTRDAVLNRLIETLSTESILSKRY-----GTLKSDDATTVAKLIEEEAY 109

Query: 88  XXXXXXXXXXXXXIKALQLYSKEVSRRLLDFVKSR 122
                        IK L+LYSKE+S+R+L+ VK+R
Sbjct: 110 GVASNAVSSDDDGIKILELYSKEISKRMLESVKAR 144



>AT5G43070.1 | chr5:17289259-17289726 REVERSE LENGTH=156
          Length = 155

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 5/94 (5%)

Query: 29  FSFSIWPPTQRTRDAVVRRLVDTLGGDTILCKRYXXXXXXXXXXXXXXXXXXXXXXXXXX 88
            S  IWPPTQ+TRDAV+ RL++TL  ++IL KR+                          
Sbjct: 40  ISLRIWPPTQKTRDAVINRLIETLSTESILSKRF-----GSLESEEASSVAKSIEDEAYA 94

Query: 89  XXXXXXXXXXXXIKALQLYSKEVSRRLLDFVKSR 122
                       I+ L+ YSKE+S+R+L+ VK++
Sbjct: 95  IASATVFGDDDGIEILKAYSKEISKRMLESVKAK 128



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,494,378
Number of extensions: 23033
Number of successful extensions: 41
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 2
Length of query: 155
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 65
Effective length of database: 8,639,129
Effective search space: 561543385
Effective search space used: 561543385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 107 (45.8 bits)