BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0206900 Os03g0206900|AK108941
         (272 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0206900  Zinc finger, RING-type domain containing protein    431   e-121
Os12g0580700  Similar to RING-H2 finger protein ATL2N              69   4e-12

>Os03g0206900 Zinc finger, RING-type domain containing protein
          Length = 272

 Score =  431 bits (1108), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 221/272 (81%), Positives = 221/272 (81%)

Query: 1   MTSASELFTXXXXXXXXXXXXXXXXXXXXXXXXXXXGLADXXXXXXXXXXXXQLDAAGDV 60
           MTSASELFT                           GLAD            QLDAAGDV
Sbjct: 1   MTSASELFTARRARAARLSDPDPDPDPPADALHDPHGLADRRGRRRGCRPRRQLDAAGDV 60

Query: 61  RQHLHTGAPPSRRRASYTDRVLSYIDNSNIGDSATRRNRLDRLMFRTNERLPGAVLQAQA 120
           RQHLHTGAPPSRRRASYTDRVLSYIDNSNIGDSATRRNRLDRLMFRTNERLPGAVLQAQA
Sbjct: 61  RQHLHTGAPPSRRRASYTDRVLSYIDNSNIGDSATRRNRLDRLMFRTNERLPGAVLQAQA 120

Query: 121 RVLERLRGISIGSSVSRPSITLDEFSATDVFRIIDFGNRDAPYEANRXXXXXXXXXXXXD 180
           RVLERLRGISIGSSVSRPSITLDEFSATDVFRIIDFGNRDAPYEANR            D
Sbjct: 121 RVLERLRGISIGSSVSRPSITLDEFSATDVFRIIDFGNRDAPYEANRSSSSLAHPSSESD 180

Query: 181 EERSPIDTSSLKRSRGLSKAAFLRLQIEIFEASKDDNREASPECSICLDGFYDGDELIKL 240
           EERSPIDTSSLKRSRGLSKAAFLRLQIEIFEASKDDNREASPECSICLDGFYDGDELIKL
Sbjct: 181 EERSPIDTSSLKRSRGLSKAAFLRLQIEIFEASKDDNREASPECSICLDGFYDGDELIKL 240

Query: 241 RCGHRFHSNCLEPWVRKCADCPYCRTNIQSRS 272
           RCGHRFHSNCLEPWVRKCADCPYCRTNIQSRS
Sbjct: 241 RCGHRFHSNCLEPWVRKCADCPYCRTNIQSRS 272



>Os12g0580700 Similar to RING-H2 finger protein ATL2N
          Length = 258

 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 39/56 (69%), Gaps = 2/56 (3%)

Query: 215 DDNREASP--ECSICLDGFYDGDELIKLRCGHRFHSNCLEPWVRKCADCPYCRTNI 268
           DD+  A P  ECSICL+   D D L++LRC H FHS CLE W+R  +DCPYCR ++
Sbjct: 197 DDDELAGPSTECSICLERCGDADGLLELRCKHIFHSACLERWLRSRSDCPYCRASV 252



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,137,471
Number of extensions: 262620
Number of successful extensions: 1047
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1131
Number of HSP's successfully gapped: 2
Length of query: 272
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 173
Effective length of database: 11,866,615
Effective search space: 2052924395
Effective search space used: 2052924395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)