Os12g0580700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RING-H2 finger protein ATL2N.
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Os12g0580700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RING-H2 finger protein ATL2N.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.97 | 0.41 | 10.7 | 0.167 | 2.4 | 0.888 | 0.307 | -2.32 | -0.141 | 18 | 0.3792 | 4334 | -- | -- |
| 77.03 | 0.409 | 10.6 | 0.27 | 2.4 | 0.411 | 0.299 | -- | -0.171 | 18 | 2 | 8240 | -- | -- |
| 75.91 | 0.406 | 10.7 | 0.127 | 2.41 | 0.914 | -- | -2.51 | -0.146 | 18 | 0.4346 | 4333 | -- | -- |
| 77.25 | 0.409 | 10.6 | 0.267 | 2.4 | 0.411 | -- | -- | -0.169 | 18 | 2 | 8113 | -- | -- |
| 373.98 | 0.901 | 10.7 | -0.303 | -- | 1.48 | -- | -4.18 | -0.213 | -- | 0.6808 | 10591 | -- | -- |
| 80.73 | 0.421 | 10.6 | 0.368 | 2.4 | -- | 0.296 | -- | -0.194 | 18 | -- | -- | -- | -- |
| 80.94 | 0.421 | 10.6 | 0.366 | 2.4 | -- | -- | -- | -0.193 | 18 | -- | -- | -- | -- |
| 372.16 | 0.898 | 10.6 | 0.164 | -- | 0.609 | -- | -- | -0.204 | -- | 2.165 | 13210 | -- | -- |
| 77.4 | 0.41 | 10.6 | -- | 2.39 | 0.44 | -- | -- | -0.172 | 18 | 2.072 | 14890 | -- | -- |
| 380.51 | 0.911 | 10.6 | 0.296 | -- | -- | -- | -- | -0.248 | -- | -- | -- | -- | -- |
| 84.47 | 0.43 | 10.6 | -- | 2.4 | -- | -- | -- | -0.234 | 18 | -- | -- | -- | -- |
| 372.11 | 0.898 | 10.6 | -- | -- | 0.539 | -- | -- | -0.197 | -- | 2.168 | 14770 | -- | -- |
| 382.82 | 0.913 | 10.6 | -- | -- | -- | -- | -- | -0.28 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.20 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 9 |
| 2 | 63.99 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 19 |
| 3 | 64.01 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 10 |
| 4 | 64.01 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 5 | 64.33 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 3 |
| 6 | 64.33 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 3 |
| 7 | 64.36 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 5 |
| 8 | 64.36 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 5 |
| 9 | 64.38 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 19 |
| 10 | 64.39 | wind | 7.0 | 270 | < th | dose independent | rect. | 1 | 10 |
| 11 | 64.42 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 5 |
| 12 | 64.42 | radiation | 40.0 | 270 | < th | dose independent | rect. | 16 | 5 |
| 13 | 64.42 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 19 |
| 14 | 64.46 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 14 |
| 16 | 64.50 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 19 |
| 17 | 64.51 | wind | 1.0 | 270 | > th | dose independent | rect. | 17 | 3 |
| 18 | 64.51 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 16 | 4 |
| 21 | 64.57 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 10 |
| 22 | 64.57 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 6 |
| 23 | 64.58 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 3 |
| 24 | 64.58 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 17 | 3 |
| 25 | 64.58 | radiation | 20.0 | 270 | < th | dose independent | rect. | 17 | 3 |
| 28 | 64.58 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 21 |
| 30 | 64.60 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 10 |
| 31 | 64.60 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 10 |
| 32 | 64.60 | temperature | 10.0 | 270 | > th | dose independent | rect. | 11 | 14 |
| 33 | 64.65 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 10 |
| 34 | 64.66 | wind | 9.0 | 270 | < th | dose independent | rect. | 20 | 21 |
| 37 | 64.77 | wind | 1.0 | 270 | > th | dose independent | rect. | 16 | 5 |
| 38 | 64.78 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 5 |
| 39 | 64.81 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 3 |
| 40 | 64.83 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 16 | 5 |
| 42 | 64.88 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 19 |
| 43 | 64.88 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 19 |
| 50 | 65.07 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 21 |
| 53 | 65.10 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 3 |
| 63 | 65.22 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 3 |
| 65 | 65.24 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 21 |
| 66 | 65.24 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 21 |
| 81 | 65.52 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 5 |
| 85 | 65.53 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 17 | 3 |
| 99 | 65.73 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 14 |
| 100 | 65.73 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 14 |
| 101 | 65.78 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 21 | 19 |
| 111 | 65.97 | wind | 9.0 | 270 | < th | dose dependent | rect. | 16 | 4 |
| 112 | 65.99 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 16 | 5 |
| 134 | 66.25 | wind | 9.0 | 270 | < th | dose dependent | rect. | 15 | 6 |
| 183 | 66.69 | humidity | 50.0 | 90 | > th | dose independent | rect. | 17 | 5 |
| 210 | 66.82 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 11 | 4 |
| 227 | 66.93 | humidity | 50.0 | 270 | > th | dose independent | rect. | 11 | 4 |
| 242 | 67.08 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 22 | 19 |
| 245 | 67.11 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 3 |
| 293 | 67.44 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 11 | 4 |
| 317 | 67.54 | radiation | 30.0 | 270 | < th | dose independent | rect. | 16 | 17 |
| 318 | 67.55 | temperature | 10.0 | 270 | > th | dose independent | rect. | 11 | 4 |
| 319 | 67.55 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 11 | 4 |
| 320 | 67.55 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 20 |
| 322 | 67.56 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 11 | 14 |
| 344 | 67.66 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 4 |
| 359 | 67.74 | humidity | 60.0 | 90 | > th | dose independent | rect. | 13 | 4 |
| 362 | 67.75 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 6 | 16 |
| 363 | 67.76 | temperature | 20.0 | 270 | > th | dose independent | rect. | 11 | 4 |
| 364 | 67.76 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 18 | 5 |
| 367 | 67.76 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 18 | 5 |
| 369 | 67.76 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 18 | 5 |
| 381 | 67.76 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 23 | 19 |
| 384 | 67.77 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 4 |
| 387 | 67.77 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 4 |
| 388 | 67.77 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 11 | 11 |
| 413 | 67.87 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 20 |
| 415 | 67.87 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 20 |
| 427 | 67.94 | radiation | 1.0 | 90 | < th | dose independent | rect. | 11 | 11 |
| 437 | 67.96 | radiation | 1.0 | 270 | > th | dose independent | rect. | 11 | 4 |
| 461 | 68.03 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 20 |
| 464 | 68.04 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 15 |
| 473 | 68.08 | wind | 1.0 | 270 | > th | dose dependent | rect. | 17 | 3 |
| 474 | 68.10 | humidity | 60.0 | 270 | > th | dose independent | rect. | 13 | 1 |
| 488 | 68.19 | temperature | 10.0 | 270 | > th | dose independent | rect. | 9 | 7 |
| 489 | 68.19 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 9 | 7 |
| 490 | 68.19 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 17 |
| 500 | 68.22 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 16 | 17 |
| 507 | 68.25 | wind | 9.0 | 270 | < th | dose independent | rect. | 9 | 7 |
| 508 | 68.25 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 9 | 7 |
| 562 | 68.39 | wind | 1.0 | 270 | > th | dose independent | rect. | 11 | 4 |
| 578 | 68.41 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 17 |
| 579 | 68.41 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 17 |
| 581 | 68.42 | temperature | 30.0 | 10 | < th | dose independent | rect. | 22 | 19 |
| 584 | 68.43 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 16 | 5 |
| 590 | 68.46 | wind | 1.0 | 270 | > th | dose independent | rect. | 11 | 14 |
| 593 | 68.47 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 7 |
| 595 | 68.47 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 7 |
| 613 | 68.52 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 18 | 4 |
| 618 | 68.54 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 17 |
| 672 | 68.62 | temperature | 30.0 | 10 | < th | dose independent | rect. | 12 | 5 |
| 682 | 68.66 | wind | 9.0 | 10 | < th | dose independent | rect. | 22 | 21 |
| 688 | 68.67 | temperature | 30.0 | 10 | < th | dose independent | rect. | 19 | 3 |
| 778 | 68.80 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 20 | 10 |
| 799 | 68.85 | temperature | 30.0 | 270 | < th | dose independent | rect. | 11 | 4 |
| 801 | 68.85 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 15 |
| 802 | 68.85 | radiation | 1.0 | 90 | < th | dose dependent | sin | 21 | NA |
| 803 | 68.85 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 15 |
| 808 | 68.86 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 17 | 5 |
| 814 | 68.87 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 8 |
| 826 | 68.90 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 11 | 4 |
| 839 | 68.91 | wind | 9.0 | 10 | < th | dose dependent | rect. | 17 | 5 |
| 841 | 68.92 | humidity | 50.0 | 90 | > th | dose independent | rect. | 17 | 18 |
| 847 | 68.93 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 20 | 18 |
| 854 | 68.95 | radiation | 1.0 | 270 | > th | dose independent | rect. | 9 | 7 |
| 877 | 68.98 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 17 | 18 |
| 895 | 69.00 | radiation | 1.0 | 270 | < th | dose independent | rect. | 20 | 10 |
| 896 | 69.00 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 6 |
| 897 | 69.01 | humidity | 90.0 | 270 | < th | dose independent | rect. | 11 | 4 |
| 922 | 69.09 | humidity | 50.0 | 270 | > th | dose independent | rect. | 11 | 15 |
| 946 | 69.15 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 3 |
| 960 | 69.18 | temperature | 30.0 | 30 | < th | dose independent | rect. | 17 | 5 |
| 966 | 69.18 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 20 | 14 |