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Os03g0206900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.5 (0.0141) R2 : 0.0873
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.196 (0.0296) R2dN8 : 0.113 R2N8 : 0.0873
σ : 0.265
deviance : 32.23
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
14.04 0.176 12.5 0.77 0.46 -0.319 -0.175 1.42 0.333 0.615 25.62 1500 -- --
14.48 0.177 12.5 0.435 0.461 -0.21 -0.172 -- 0.312 0.731 25.4 11521 -- --
14.16 0.175 12.5 0.771 0.46 -0.324 -- 1.43 0.332 0.639 25.7 1513 -- --
14.54 0.178 12.5 0.449 0.463 -0.231 -- -- 0.325 0.804 22.33 11460 -- --
20.82 0.214 12.5 0.572 -- -0.685 -- 1.51 0.295 -- 25.7 1513 -- --
15.99 0.187 12.5 0.324 0.454 -- -0.176 -- 0.225 0.67 -- -- -- --
16.12 0.188 12.5 0.331 0.455 -- -- -- 0.226 0.703 -- -- -- --
20.86 0.214 12.5 0.452 -- -0.576 -- -- 0.319 -- 22.33 11460 -- --
17.9 0.197 12.5 -- 0.451 0.155 -- -- 0.132 0.733 20.3 47520 -- --
29.05 0.252 12.5 0.347 -- -- -- -- 0.234 -- -- -- -- --
19.01 0.204 12.5 -- 0.46 -- -- -- 0.189 0.737 -- -- -- --
26.06 0.239 12.5 -- -- -0.491 -- -- 0.258 -- 22.33 11460 -- --
32.23 0.265 12.5 -- -- -- -- -- 0.196 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 13.46 humidity 80.0 43200 > th dose independent rect. 5 2
3 13.47 humidity 80.0 43200 < th dose independent rect. 5 2
4 13.47 humidity 80.0 43200 < th dose independent rect. 3 5
10 13.51 temperature 25.0 1440 > th dose dependent rect. 17 2
35 13.60 temperature 25.0 1440 < th dose independent rect. 20 2
47 13.63 temperature 25.0 1440 > th dose independent rect. 20 2
69 13.66 humidity 80.0 43200 < th dose dependent rect. 22 10
89 13.70 humidity 70.0 1440 > th dose independent rect. 13 6
102 13.71 precipitation 0.1 43200 > th dose dependent rect. 19 1
133 13.75 wind 9.0 43200 < th dose dependent rect. 12 1
137 13.76 temperature 30.0 43200 > th dose dependent rect. 12 1
139 13.76 humidity 80.0 43200 < th dose dependent rect. 22 1
141 13.76 humidity 80.0 43200 < th dose dependent rect. 2 5
165 13.78 humidity 80.0 43200 < th dose independent rect. 24 1
172 13.78 temperature 25.0 1440 > th dose dependent sin 16 NA
174 13.78 wind 1.0 43200 > th dose dependent rect. 12 1
176 13.78 humidity 80.0 43200 < th dose dependent rect. 22 3
187 13.79 wind 3.0 43200 < th dose independent rect. 6 8
191 13.79 humidity 70.0 1440 > th dose dependent rect. 18 1
192 13.79 humidity 80.0 43200 < th dose dependent rect. 5 1
194 13.79 humidity 70.0 1440 > th dose dependent rect. 10 10
197 13.79 temperature 20.0 10 > th dose dependent rect. 8 15
202 13.80 wind 9.0 14400 < th dose independent rect. 10 1
204 13.80 wind 3.0 43200 > th dose independent rect. 11 2
209 13.80 humidity 80.0 1440 < th dose independent rect. 10 10
211 13.80 humidity 80.0 43200 < th dose dependent rect. 24 1
226 13.81 precipitation 0.1 43200 > th dose independent rect. 19 1
229 13.81 wind 3.0 43200 > th dose independent rect. 6 8
230 13.81 humidity 80.0 1440 > th dose independent rect. 9 12
267 13.83 humidity 70.0 1440 > th dose independent rect. 13 2
289 13.83 wind 9.0 14400 > th dose dependent rect. 10 1
299 13.83 temperature 30.0 43200 > th dose dependent rect. 9 5
325 13.84 temperature 30.0 14400 < th dose independent rect. 15 1
326 13.84 temperature 30.0 43200 < th dose independent rect. 6 3
332 13.84 temperature 30.0 43200 < th dose independent rect. 1 8
343 13.84 temperature 30.0 43200 < th dose independent rect. 19 14
353 13.84 temperature 30.0 43200 > th dose dependent rect. 9 1
421 13.85 temperature 30.0 14400 > th dose independent rect. 15 1
422 13.85 temperature 30.0 43200 < th dose independent rect. 8 2
442 13.85 temperature 30.0 43200 > th dose dependent sin 7 NA
445 13.85 temperature 30.0 43200 > th dose dependent sin 5 NA
447 13.85 humidity 80.0 43200 < th dose dependent rect. 2 1
477 13.86 precipitation 0.1 43200 < th dose independent rect. 19 1
479 13.86 temperature 30.0 43200 > th dose independent rect. 8 2
505 13.86 temperature 30.0 43200 > th dose dependent sin 2 NA
510 13.86 precipitation 0.1 43200 < th dose dependent rect. 19 1
511 13.86 radiation 1.0 1440 < th dose dependent rect. 17 2
521 13.86 wind 3.0 43200 < th dose dependent rect. 3 10
534 13.87 temperature 30.0 43200 < th dose independent rect. 15 20
536 13.87 temperature 30.0 43200 > th dose dependent sin 0 NA
552 13.87 radiation 1.0 1440 < th dose dependent rect. 17 9
577 13.88 wind 1.0 43200 > th dose independent rect. 1 1
581 13.88 wind 3.0 43200 < th dose independent rect. 11 2
623 13.88 temperature 30.0 43200 > th dose independent rect. 15 20
625 13.88 temperature 30.0 43200 > th dose dependent sin 21 NA
628 13.88 temperature 30.0 43200 > th dose dependent no NA NA
637 13.88 wind 5.0 43200 < th dose dependent rect. 6 8
683 13.88 radiation 1.0 720 < th dose dependent rect. 4 15
786 13.89 humidity 80.0 1440 > th dose independent sin 22 NA
819 13.89 temperature 30.0 43200 > th dose dependent sin 19 NA
823 13.89 wind 3.0 43200 < th dose dependent rect. 7 2
852 13.89 wind 5.0 43200 < th dose dependent rect. 3 13
853 13.89 wind 3.0 43200 < th dose dependent rect. 24 13
887 13.89 temperature 30.0 43200 > th dose dependent rect. 14 23
889 13.90 humidity 80.0 1440 < th dose independent sin 22 NA
894 13.90 humidity 80.0 1440 < th dose independent rect. 10 5
895 13.90 humidity 70.0 1440 < th dose independent rect. 13 5
909 13.90 humidity 70.0 1440 > th dose dependent rect. 13 7
921 13.91 temperature 30.0 43200 > th dose independent sin 7 NA
925 13.91 humidity 80.0 14400 > th dose independent rect. 14 1
946 13.91 temperature 30.0 43200 > th dose dependent sin 16 NA
953 13.91 wind 3.0 43200 < th dose dependent rect. 6 4
989 13.92 temperature 30.0 43200 > th dose independent sin 2 NA
993 13.92 temperature 30.0 43200 < th dose independent sin 7 NA
998 13.92 temperature 30.0 43200 < th dose independent sin 5 NA