BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0206400 Os03g0206400|AK066494
         (91 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0206400  Conserved hypothetical protein                      152   5e-38
Os03g0762500  Conserved hypothetical protein                       69   6e-13
Os07g0115500  Conserved hypothetical protein                       65   7e-12

>Os03g0206400 Conserved hypothetical protein
          Length = 91

 Score =  152 bits (384), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 77/91 (84%), Positives = 77/91 (84%)

Query: 1  MGYWWDRVVLPVRRAWLGVAARFGVRQTGLWRLRQEVSTCEYEDVRVMWEMLSRTSTXXX 60
          MGYWWDRVVLPVRRAWLGVAARFGVRQTGLWRLRQEVSTCEYEDVRVMWEMLSRTST   
Sbjct: 1  MGYWWDRVVLPVRRAWLGVAARFGVRQTGLWRLRQEVSTCEYEDVRVMWEMLSRTSTAGA 60

Query: 61 XXXXXXXXXXXHSRFRQPRPWTESICLCAGF 91
                     HSRFRQPRPWTESICLCAGF
Sbjct: 61 GAGRAAPPARRHSRFRQPRPWTESICLCAGF 91



>Os03g0762500 Conserved hypothetical protein
          Length = 94

 Score = 69.3 bits (168), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 41/53 (77%), Gaps = 1/53 (1%)

Query: 6  DRVVLPVRRAWLGVAARFGVRQT-GLWRLRQEVSTCEYEDVRVMWEMLSRTST 57
          DR  +PV+R WLG+AAR G+R+T GL +L++EV TCEY DV +MWEML +T  
Sbjct: 4  DRAAVPVKRVWLGLAARLGLRRTSGLGKLKKEVRTCEYHDVHIMWEMLRKTDA 56



>Os07g0115500 Conserved hypothetical protein
          Length = 94

 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 39/54 (72%), Gaps = 1/54 (1%)

Query: 1  MGYWWDRVVLPVRRAWLGVAARFGVRQT-GLWRLRQEVSTCEYEDVRVMWEMLS 53
          M     R  +PV+R WLG++AR G+R+T GL +LR EV TCEY DV VMWEMLS
Sbjct: 1  MSCLLGRAAVPVKRVWLGLSARLGLRRTTGLGKLRNEVRTCEYSDVHVMWEMLS 54



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.329    0.137    0.506 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,803,541
Number of extensions: 75078
Number of successful extensions: 254
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 3
Length of query: 91
Length of database: 17,035,801
Length adjustment: 61
Effective length of query: 30
Effective length of database: 13,850,747
Effective search space: 415522410
Effective search space used: 415522410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)