BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0199000 Os03g0199000|AK072933
         (156 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0199000  Conserved hypothetical protein                      201   2e-52
Os12g0511300  Conserved hypothetical protein                      140   3e-34

>Os03g0199000 Conserved hypothetical protein
          Length = 156

 Score =  201 bits (510), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 117/156 (75%), Positives = 117/156 (75%)

Query: 1   FYYQGKRPDIFVVNSFGSGFQALFVFLLLPFLSNLKGIPLAELPAYINRGAACFLNIGGN 60
           FYYQGKRPDIFVVNSFGSGFQALFVFLLLPFLSNLKGIPLAELPAYINRGAACFLNIGGN
Sbjct: 1   FYYQGKRPDIFVVNSFGSGFQALFVFLLLPFLSNLKGIPLAELPAYINRGAACFLNIGGN 60

Query: 61  LKDCHGAPLLPLLFIAMNMAFNISVLNLVKMXXXXXXXXXXXXXXXXXIYVLSLPLPYIP 120
           LKDCHGAPLLPLLFIAMNMAFNISVLNLVKM                 IYVLSLPLPYIP
Sbjct: 61  LKDCHGAPLLPLLFIAMNMAFNISVLNLVKMSTALVASLTATLAVPLSIYVLSLPLPYIP 120

Query: 121 GGTNLSTSFXXXXXXXXXXXXXXXXXXXXXXRMKTD 156
           GGTNLSTSF                      RMKTD
Sbjct: 121 GGTNLSTSFLVGAAILVLGLLLYNLPKKLAGRMKTD 156



>Os12g0511300 Conserved hypothetical protein
          Length = 343

 Score =  140 bits (354), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 84/126 (66%), Positives = 95/126 (75%)

Query: 4   QGKRPDIFVVNSFGSGFQALFVFLLLPFLSNLKGIPLAELPAYINRGAACFLNIGGNLKD 63
           +G+RPDIFVVNSFGSGFQALFVFLLLP LSNLKGI  AELPAY+N GA CFLN+  +L D
Sbjct: 191 KGRRPDIFVVNSFGSGFQALFVFLLLPLLSNLKGIKFAELPAYLNGGAECFLNVDDSLID 250

Query: 64  CHGAPLLPLLFIAMNMAFNISVLNLVKMXXXXXXXXXXXXXXXXXIYVLSLPLPYIPGGT 123
           C GAP LPLLFI +NMAFNI++LNLVK+                 IY+LSLPLPYIP G 
Sbjct: 251 CGGAPFLPLLFILVNMAFNIALLNLVKLSSALVASLTATSAVPISIYILSLPLPYIPHGA 310

Query: 124 NLSTSF 129
            LS+SF
Sbjct: 311 ELSSSF 316



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.329    0.147    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,848,084
Number of extensions: 121535
Number of successful extensions: 260
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 2
Length of query: 156
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 64
Effective length of database: 12,232,113
Effective search space: 782855232
Effective search space used: 782855232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 151 (62.8 bits)