BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0197000 Os03g0197000|AK071163
(252 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0197000 Conserved hypothetical protein 520 e-148
Os02g0197700 Conserved hypothetical protein 299 2e-81
>Os03g0197000 Conserved hypothetical protein
Length = 252
Score = 520 bits (1340), Expect = e-148, Method: Compositional matrix adjust.
Identities = 252/252 (100%), Positives = 252/252 (100%)
Query: 1 MQQMSRPSVIIKLILGLLWFIVHLAISLCSLWFDLIYSIECYLISFGLIPKYRKFQLDRL 60
MQQMSRPSVIIKLILGLLWFIVHLAISLCSLWFDLIYSIECYLISFGLIPKYRKFQLDRL
Sbjct: 1 MQQMSRPSVIIKLILGLLWFIVHLAISLCSLWFDLIYSIECYLISFGLIPKYRKFQLDRL 60
Query: 61 KHLAVVVDSREAKNVAKINQLLCWLSNVGVKYVCLYDIDGVLKKTFAPAMNGSRYGNSGK 120
KHLAVVVDSREAKNVAKINQLLCWLSNVGVKYVCLYDIDGVLKKTFAPAMNGSRYGNSGK
Sbjct: 61 KHLAVVVDSREAKNVAKINQLLCWLSNVGVKYVCLYDIDGVLKKTFAPAMNGSRYGNSGK 120
Query: 121 YLDVGANTKALTCCHKEMTIECISGSDGKDGIAKAASLLCSTCVNGNRNTCGNGEIVFTE 180
YLDVGANTKALTCCHKEMTIECISGSDGKDGIAKAASLLCSTCVNGNRNTCGNGEIVFTE
Sbjct: 121 YLDVGANTKALTCCHKEMTIECISGSDGKDGIAKAASLLCSTCVNGNRNTCGNGEIVFTE 180
Query: 181 ADMSGALKAIGCGGPEPDLLLVYGPARCHLGFPAWRLRYTEIMHMGPLNSMKYGAIVKAF 240
ADMSGALKAIGCGGPEPDLLLVYGPARCHLGFPAWRLRYTEIMHMGPLNSMKYGAIVKAF
Sbjct: 181 ADMSGALKAIGCGGPEPDLLLVYGPARCHLGFPAWRLRYTEIMHMGPLNSMKYGAIVKAF 240
Query: 241 YKFSKKYQNFGK 252
YKFSKKYQNFGK
Sbjct: 241 YKFSKKYQNFGK 252
>Os02g0197700 Conserved hypothetical protein
Length = 240
Score = 299 bits (765), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 150/244 (61%), Positives = 178/244 (72%), Gaps = 4/244 (1%)
Query: 9 VIIKLILGLLWFIVHLAISLCSLWFDLIYSIECYLISFGLIPKYRKFQLDRLKHLAVVVD 68
+I+KLILGLLW +VHL IS L +ECYLISF L+PKYR L+RL +L VVVD
Sbjct: 1 MILKLILGLLWCLVHLVISFFGSLSHLKNDLECYLISFKLLPKYRNLHLERLAYLGVVVD 60
Query: 69 SREAKNVAKINQLLCWLSNVGVKYVCLYDIDGVLKKTFAPAMNGSRYGNSGKYLDVGANT 128
SREAKN K+ QLL W S +G+ Y+ LYDI+GVLK+ P + S GN LDV A+T
Sbjct: 61 SREAKNALKVKQLLRWFSTIGINYLILYDIEGVLKELIQPGIETSTDGNPINSLDVVADT 120
Query: 129 KALTCCHKEMTIECISGSDGKDGIAKAASLLCSTCVNGNRNTCGNGEIVFTEADMSGALK 188
KA H M +EC+S SDGK+ IAK A+LL STC N + + EI FTEADM+ ALK
Sbjct: 121 KASCYRHGGMFMECLSSSDGKEAIAKVANLLYSTCCNSDNKS----EIAFTEADMTHALK 176
Query: 189 AIGCGGPEPDLLLVYGPARCHLGFPAWRLRYTEIMHMGPLNSMKYGAIVKAFYKFSKKYQ 248
A+G GGPEPDLLLVYGP R HLGFPAWRLRYTEIM++GPL SMKYG IVKA Y+FS+KYQ
Sbjct: 177 AVGTGGPEPDLLLVYGPGRFHLGFPAWRLRYTEIMYVGPLESMKYGTIVKALYRFSRKYQ 236
Query: 249 NFGK 252
N+GK
Sbjct: 237 NYGK 240
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.140 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,990,359
Number of extensions: 388857
Number of successful extensions: 946
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 945
Number of HSP's successfully gapped: 2
Length of query: 252
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 154
Effective length of database: 11,918,829
Effective search space: 1835499666
Effective search space used: 1835499666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)